Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10591 109 5e-19 seq1776 109 5e-19 seq465 109 5e-19 seq23525 104 2e-17 seq69432 96.9 3e-15 seq21443 91.5 1e-13 seq11136 87.8 2e-12 >seq10591 Length=527945 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||| || | || |||||||| || || ||||| || Sbjct 132095 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAG 132154 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| || || | |||| |||||||| || || || Sbjct 132155 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 132214 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||| | ||| ||| || |||| | || | |||||| | |||||| Sbjct 132215 ATACCCTCCTTGT-CTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 132273 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | |||||||| || | || |||||||| ||||||||| Sbjct 132274 CTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATG 132322 >seq1776 Length=1009680 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 76311 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 76252 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || |||||||| ||| Sbjct 76251 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 76192 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| || Sbjct 76191 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCA 76132 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 76131 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 76082 >seq465 Length=2116526 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||| || | || |||||||| || || ||||| || Sbjct 2111695 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 2111636 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| || || | |||| |||||||| || || || Sbjct 2111635 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 2111576 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||| | ||| ||| || |||| | || | |||||| | |||||| Sbjct 2111575 ATACCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 2111517 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | |||||||| || || || || ||||| ||||||||| Sbjct 2111516 CTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 2111468 >seq23525 Length=221919 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || | Sbjct 219781 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 219840 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || ||||| |||||| || |||||||| ||||| Sbjct 219841 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 219900 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| ||| || ||| | | ||| | || || | || || Sbjct 219901 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 219960 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 219961 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 220007 >seq69432 Length=13378 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 12330 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 12389 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || |||||||| ||| Sbjct 12390 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 12449 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | | |||| || Sbjct 12450 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCA 12509 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || | |||||||| || |||||||||| Sbjct 12510 ACCTCGAGGGTGATGGTCTTCCCCATAAGAGTTTTCAC-GAAATCTGCAT 12558 >seq21443 Length=656158 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || | ||||| | Sbjct 30107 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 30166 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| ||||| || ||||| ||||| Sbjct 30167 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 30226 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| ||| | | ||||| |||||| | ||| || || | ||| | Sbjct 30227 TCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 30286 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 30287 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 30321 >seq11136 Length=3384853 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 126888 CACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCA 126947 |||| || | || |||||| ||||| | ||||||||||||||||||||||| || || Sbjct 1795544 CACCACGAAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACA 1795603 Query 126948 TCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGA-TCG--GGAG 127004 || || ||| || || || || ||||| |||||| || ||||||| | | |||| Sbjct 1795604 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACTAGGAGGAG 1795663 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | || || ||||| || ||| || || | | ||| | ||||| | || Sbjct 1795664 GAATTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCTGAGGGTTCAT 1795723 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| ||| | || || || || || ||| | || ||||||||||| Sbjct 1795724 CCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 1795772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474876514999680