Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq24143 188 1e-42 seq5139 118 2e-21 >seq24143 Length=1765303 Score = 188 bits (208), Expect = 1e-42 Identities = 176/224 (79%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| |||||||||||||| || || ||||| || |||||||| || Sbjct 174548 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 174607 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 174608 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 174667 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| ||||||| || || |||| || | || | ||| | Sbjct 174668 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 174727 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| |||||||| || || ||||| Sbjct 174728 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 174771 Score = 172 bits (190), Expect = 8e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||| || || ||||| |||||||| | || || || | ||| Sbjct 172546 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 172605 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || || || || |||||||| || || || || || || Sbjct 172606 TGAAAACCCACTTCTCCACCAAAAGTACTTGGCTTCCAGTAGGCAGGAGAACATATAACA 172665 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| ||||| || || | || | ||| ||||||| ||| Sbjct 172666 TTACCCATAAGTCCTTTCAAGGAGAACGGTGCTCCAACTTCTACCATGGTCTCACCAAAG 172725 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | ||||| || ||||| || | | | ||| || || || ||||| |||| | Sbjct 172726 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCACAGCATCGATG 172785 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || ||||| ||||||||||| |||| || ||||| || ||| Sbjct 172786 TCACCGTAGAGTGCTTCCAACTCTGCAGACATTTCCTTTTCTCCT 172830 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| ||| | |||||||| || |||||| ||| ||| | || Sbjct 175705 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 175764 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || |||||||||| ||| |||||||||||||| Sbjct 175765 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCGAACATCATGTTTGTGCCCTGGGGATC 175824 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || | || | | || || ||| |||||||||| ||||||| || || | Sbjct 175825 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 175884 Query 10301 CGCCTTACCTGA 10312 | ||||||||| Sbjct 175885 CTTCTTACCTGA 175896 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | |||||| ||||||||| ||| || ||||| || | ||| ||| Sbjct 176317 TCACCTTTCACACCCAAAGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGGTA 176376 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || || ||||||||||| ||||||||||| || | ||||| Sbjct 176377 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAAGTT 176436 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 176437 GGTGGACTGTCAATCAAATGTGATCTGGCT 176466 Score = 102 bits (112), Expect = 1e-16 Identities = 193/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || | ||||| |||||||| || ||||| ||||| || | | | || Sbjct 173966 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGCAATTCCATGTTCCAGTAATATA 174025 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || || ||| ||| || |||| ||| Sbjct 174026 GAGTTGTTGTAGATAAACTGTTGATAGTTGTATTTCTGGTCATGAATTTGAAAGGTGTCA 174085 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| | ||||||||||| ||||| || || || || || |||||| Sbjct 174086 GGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATACGATTTTGGTAC 174145 Query 9616 TGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTG 9675 || || | ||| |||| || |||||||| | || | |||||| || || || Sbjct 174146 TGGAATTGTTTGTTGAAAAGTAGTTCTGGGTCAAATTTCAGTTTGAAGTGATAGCCACTC 174205 Query 9676 AGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | ||||| ||||| | | || | ||| ||||| || || || Sbjct 174206 AAGTGCTGTACATAATCTTCAATCACAATCTTAATAGTCTCTCC 174249 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| | |||| || || ||||| |||||||||||| ||| | Sbjct 177379 CTTACGTGTTGAGCAGTTTTCACCATAGAATCCTGTCCGGGTACAATCGCACTTATATTG 177438 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||||| || || || |||| ||||||||||| || Sbjct 177439 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACATGGGTAGGAACAGCAAGGATT 177498 Query 10960 GGCTGCAATTTAA 10972 ||| |||| || Sbjct 177499 TGCTATAATTAAA 177511 >seq5139 Length=3098435 Score = 118 bits (130), Expect = 2e-21 Identities = 177/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || ||||||| || || | || ||||| || ||||| || ||||||||| Sbjct 157982 GTGGCCGTCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTAC 158041 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||| Sbjct 158042 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 158101 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCC-AGTGTA 9111 || || ||||| || || || | ||| | ||||| | || | |||| || ||| Sbjct 158102 ATCATACTCTCCCCAAATATAGAGTTTGGATGGCACTTTTCAA-GAAGCAGCCCAGGGTA 158160 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| || | |||||||| || || ||||||||||| Sbjct 158161 GAACTCCAACGCATCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTC 158220 Query 9172 ACCTACAAG 9180 ||| |||| Sbjct 158221 TCCTGCAAG 158229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722777817508800