Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq465 149 4e-31 seq10591 138 7e-28 seq782 129 4e-25 seq621 111 1e-19 seq10379 107 1e-18 seq2511 98.7 6e-16 seq14565 96.9 2e-15 seq18355 95.1 8e-15 seq1313 95.1 8e-15 seq12761 93.3 3e-14 seq21443 89.7 3e-13 >seq465 Length=2116526 Score = 149 bits (164), Expect = 4e-31 Identities = 165/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | ||| |||||||| ||||| ||||| || || | || |||| Sbjct 2111681 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 2111622 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 2111621 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 2111562 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||| || |||||| || || || | |||| || ||| || || | ||| ||| Sbjct 2111561 TTGAATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 2111504 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| |||||||| |||||||||||||||||||| || Sbjct 2111503 GTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 2111466 >seq10591 Length=527945 Score = 138 bits (152), Expect = 7e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | ||| ||||| || ||||| ||||| || || | || |||| Sbjct 132109 CAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 132168 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 132169 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 132228 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| || ||||||| | || | |||| || ||| || || | ||| ||||| Sbjct 132229 TTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 132288 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| |||||| | ||||| |||||||||||||| || Sbjct 132289 TTTGCCCGTGTGGGTCTTTACAAAGATCTGCATGTT 132324 >seq782 Length=6300357 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||||| | ||| |||||||| ||||| ||||| || Sbjct 3450651 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 3450592 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||||||||| || ||||| || | | |||||||| | || Sbjct 3450591 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3450532 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| ||||| || || || | |||| || ||| | Sbjct 3450531 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGA 3450474 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || || || |||||||| ||||||||||| Sbjct 3450473 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3450425 >seq621 Length=1137327 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||| ||| || ||| | ||| || ||||| ||||| || || | | |||| Sbjct 429897 CAGAACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGAGGCCATC 429956 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || || |||||||| || || |||||||| | || | ||||||||||| Sbjct 429957 CTCCAGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 430016 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||| || ||||| || || | | | || || ||| || || | ||| ||| Sbjct 430017 TTGAATTTTGGCTTTGA--AATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATG 430074 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATAT 34983 || || |||||||| ||||||||||||| |||||||| Sbjct 430075 GTCTTGCCCGTGAGGGTCTTCACAAAGAGCTGCATAT 430111 >seq10379 Length=4916278 Score = 107 bits (118), Expect = 1e-18 Identities = 158/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | ||| |||||||| ||||| ||||| || || | || |||| Sbjct 1637650 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 1637591 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||| || || |||||||| || | | |||||| | || | |||||||||| Sbjct 1637590 TTCCAGCTAATTGCCAGCAAATATCAGATGCTACTGGTCAGGTGGGATACCCTCCTTGT- 1637532 Query 34889 GCTAATCTTCTG-TTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 | | | ||| | |||| | || || || | |||| || ||| || || | || || Sbjct 1637531 GTTGAACTTTGGCTTTGTC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGGGAT 1637474 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||| || ||||| |||||||||||||||||||| || Sbjct 1637473 GGTTTTGCCTGTGAGGGTCTTCACAAAGATCTGCATGTT 1637435 >seq2511 Length=2685710 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/194 (72%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||| | || || | || |||| ||||||||||| || | || | Sbjct 488338 TCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTCCCAGAAAGT 488397 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCA-CCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||||| | || | ||| |||||||| ||| || |||||| | Sbjct 488398 ATCAGACGCTGCTGGTTAGGTGGGATACCCTTCCTTGTCTTGAATTTTGGCTTTGAC--A 488455 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| | || | ||| ||||| || || |||| |||||| Sbjct 488456 TTCTAAATAGTGTCACTGGGCTCGATCTCAAGGGTGATGGTCTTGTCCATGAGGGTCTTC 488515 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 488516 ACAAAGATCTGCAT 488529 >seq14565 Length=1636251 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||| ||||| | || ||| ||||||| || |||||| Sbjct 1463596 TCTTTCTGGATGTTGCAGTCTGAAAGAGTGCGGC-----TCCGGCTGTTTGCCCGCAAAT 1463542 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||| || |||||| Sbjct 1463541 ATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGTCTTGAATTTTGGCCTTGACGTTC 1463482 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | | | |||| || ||| || |||| ||| ||| | | || ||||| ||||||||| Sbjct 1463481 TCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGATCCTACCTGTGAGGGTCTTCACA 1463422 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1463421 AAGATCTGCAT 1463411 >seq18355 Length=1729477 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||| ||| ||||| ||||| || | || | |||| ||| Sbjct 213884 ACCAGGTGCAGGGTGGACTCTTCCTGGATGTTCTAGTCTGAGGGACTGCAGCCATCCTCC 213943 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||| || |||||||| || | |||||||| || | | ||||||||||| Sbjct 213944 GGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTCCTTGTCTTGG 214003 Query 34893 ATCTTCTG-TTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || ||| | |||||| || || | | ||| |||||| || || | ||| ||||| Sbjct 214004 AT-TTCGGCTTTGAC--ATTCTCAGTGGTGTCAGTGGCCTCCACCTCAAGGGTGATGGTC 214060 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||| |||| || ||||||||||||| ||| Sbjct 214061 TTGCCCATGAGGGTGTTCACAAAGATCTCCAT 214092 >seq1313 Length=4574001 Score = 95.1 bits (104), Expect = 8e-15 Identities = 135/185 (73%), Gaps = 5/185 (3%) Strand=Plus/Minus Query 34800 ATGTTATAGTCCGAAAGGCTTCGTTC-ATCATCCAGCTGTTTTCCGGCAAATATTAGTCG 34858 |||| ||||| || || ||| | | ||| |||||||||| ||||||| ||| || | Sbjct 662741 ATGTCGTAGTCTGAGAGAGTTCCTGCCATCCCCCAGCTGTTTGCCGGCAAGTATCAGATG 662682 Query 34859 TTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT-ATCG 34917 |||||||| | || | ||||||||||| ||| || |||||| || || || | Sbjct 662681 CTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGAC--ATCCTCATTG 662624 Query 34918 AT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATC 34976 | |||| || || || || | || ||||| || ||||| || ||||||||||||||| Sbjct 662623 GTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATC 662564 Query 34977 TGCAT 34981 ||||| Sbjct 662563 TGCAT 662559 >seq12761 Length=1273535 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 34793 TTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT 34852 |||||| |||||||| || ||||| | | |||| |||| |||||| || ||||||| Sbjct 705798 TTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTCCAACTGTTTGCCCACAAATAT 705857 Query 34853 TAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGC 34912 || | |||||||| | | | ||||||||||| ||||| |||||| | | Sbjct 705858 CAGATGCTGCTGGTCAGGTAGGATGCCCTCCTTGTCATGGATCTTGGCTTTGACATTTTC 705917 Query 34913 TATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | |||| || || | || | ||| |||||| |||| ||||| ||||| ||| Sbjct 705918 -ACCGGTGTCACTGGGCTGGAACTCAAAGGTGATGGTTCTTCCTGTGAGGGTCTTTACAG 705976 Query 34972 AGATCTGCAT 34981 |||||||||| Sbjct 705977 AGATCTGCAT 705986 >seq21443 Length=656158 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 30131 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 30190 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || || || || || | Sbjct 30191 ATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTT 30250 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 30251 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 30310 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 30311 AAGATCTGCATTTT 30324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324218043832896