Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq10346 242 4e-59 seq1811 179 4e-40 seq17275 111 2e-19 seq102574 82.4 9e-11 seq7578 82.4 9e-11 seq985 82.4 9e-11 >seq10346 Length=345594 Score = 242 bits (268), Expect = 4e-59 Identities = 335/468 (72%), Gaps = 3/468 (1%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||||||||| |||||||| |||||||| || || | |||||| Sbjct 269255 TTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 269314 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||| | Sbjct 269315 GGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATA 269374 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 |||||||||| | ||||| |||| ||||| |||||| |||| ||| | || | Sbjct 269375 ACCAGAAAAGA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGC 269431 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||||| | | |||||||||||| || ||||| || || Sbjct 269432 TTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT 269491 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 |||||| || || | |||||| | |||||| |||| |||| ||||| ||||| || Sbjct 269492 TTCAATGGCATTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAG 269551 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 ||||||||||||||||| || || || || || || || || || ||| | ||||| | Sbjct 269552 GAAACTATACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCG 269611 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| | | ||||| || | ||| | || | ||||||||||| ||||| || Sbjct 269612 GGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCC 269671 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630 |||||| |||||||||||| | ||||||| |||||||| ||| || Sbjct 269672 ATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTC 269719 >seq1811 Length=1713758 Score = 179 bits (198), Expect = 4e-40 Identities = 322/462 (70%), Gaps = 9/462 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || || | |||||| ||||| || | | Sbjct 78117 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGT 78058 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | |||| ||| || | ||| ||||| ||||||||| ||||||||| | Sbjct 78057 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 77998 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--CTATAATCAG 37353 | | ||| ||| ||||| ||| ||| |||| || | | | | || | || Sbjct 77997 GTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCC-ATGGGTAACGTCTTTGTTCCC 77939 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 || |||| | |||| ||||||| || ||||| || |||||||||| || | Sbjct 77938 AA-TCCAATACAAGACCCAAACTGCCTTCTTCTTGACACAGGCA-TTGTTTCAATGGCAT 77881 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | |||||||| | |||||| ||||| | || | || ||||| || | | ||| | Sbjct 77880 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGATTATTTA 77823 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 | ||||| || | ||||| ||||| | || || ||||| || || | ||| | || Sbjct 77822 TGTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTG-TA 77764 Query 37534 AT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 || |||| || | || ||| | | |||||||||| ||||||||||||| ||| Sbjct 77763 ATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 77704 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||||||||| |||| ||| |||||||| |||||| ||| Sbjct 77703 GCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCA 77662 >seq17275 Length=3305369 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 1143215 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1143156 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 1143155 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1143096 Query 37318 CTAC 37321 | || Sbjct 1143095 CCAC 1143092 >seq102574 Length=646 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 537 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 595 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 596 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 629 >seq7578 Length=1327334 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 838428 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 838370 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 838369 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 838336 >seq985 Length=6397689 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 2229229 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 2229171 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 2229170 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 2229137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591539147273280