Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2874 129 5e-25 seq38050 111 1e-19 seq1020 109 4e-19 seq3440 98.7 8e-16 seq64438 95.1 1e-14 seq10198 87.8 1e-12 seq2198 82.4 6e-11 >seq2874 Length=3733233 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 1920571 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1920512 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 1920511 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1920452 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||| ||||| || ||||| || Sbjct 1920451 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 1920408 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 1916404 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 1916345 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 1916344 CCCTTCTTCTCTGGTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 1916285 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || |||||||| | |||||||| || Sbjct 1916284 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 1916237 >seq38050 Length=490 Score = 111 bits (122), Expect = 1e-19 Identities = 185/261 (71%), Gaps = 11/261 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 253 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 194 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTAC-CCATTATCACCACGT 112198 | ||||| |||||| || | ||||||||||||||||| ||| |||| ||||||| | Sbjct 193 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACTCCATAATCACCAGAT 134 Query 112199 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 112257 |||| || ||| |||||||| || | |||| | ||| | || | | | || || || Sbjct 133 TCTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTC 75 Query 112258 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 112316 | || || |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 74 CTGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GA 22 Query 112317 CACGGCCACGATACCGTTCAG 112337 ||| || ||||| | ||| || Sbjct 21 CACAGCGACGATGCAGTTTAG 1 >seq1020 Length=1834505 Score = 109 bits (120), Expect = 4e-19 Identities = 181/259 (70%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 1061606 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 1061547 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| |||| |||||||| ||||||| || Sbjct 1061546 GAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCCATAATCACCAGATT 1061487 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| | | |||| | ||| | || | | || || || | Sbjct 1061486 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTCC 1061428 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACA 112318 || ||| |||| ||||| || || || || || |||||||||| | | ||| Sbjct 1061427 TGAG------CGGAGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTTTGGGACA 1061374 Query 112319 CGGCCACGATACCGTTCAG 112337 | || ||||| | ||| || Sbjct 1061373 CAGCGACGATGCAGTTTAG 1061355 >seq3440 Length=2799305 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 964696 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 964637 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||||||||| ||| ||| ||||||| || Sbjct 964636 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 964577 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231 ||| || ||| |||||||| || | ||||| Sbjct 964576 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 964545 >seq64438 Length=1527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| ||| || || |||| |||||| | ||||| | | |||| |||| Sbjct 897 TGGGAAAGG-TCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATGTGACTTAGGT 955 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | || | || ||||||| || || ||||| || || || | ||| | |||| ||| | Sbjct 956 AAACATACGCATCTCCCAAAGTATGTACAAAGTCACCGGGCTTTAGGTCCGTGATGTGCG 1015 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | |||| || ||||| || | ||||||||||||||| ||| | || || | Sbjct 1016 CGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAG--------GTGCACCCAGG 1067 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29999 |||| ||||| |||| ||||| || || ||||| || | |||| | ||||| Sbjct 1068 CCCCTGACCTTTGGTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAACTG 1122 >seq10198 Length=1797438 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 ||| ||||| || |||| |||||||||||| || | || || |||| | | || ||||| Sbjct 1676257 GTATTCTGC-CCAAAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTC 1676315 Query 30219 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 | ||| ||| ||| ||||||||||||||| || || ||| | || || || | Sbjct 1676316 TCAGTGGA-GAATCCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCT 1676374 Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30338 || ||||| || || ||||| | | |||||| || ||| |||||||||| || Sbjct 1676375 CACTCCCTTGGAAGACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTC 1676434 Query 30339 CTCCA 30343 ||||| Sbjct 1676435 CTCCA 1676439 >seq2198 Length=3459117 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || |||||||| |||| || || || || | ||||| |||||| || || Sbjct 2053888 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCTTGTAAAGGTCGATTCTTCTCAGGA 2053947 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||||||||| ||||||| ||||||| ||||| || ||| Sbjct 2053948 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 2053995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408094537804136