Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq54108 159 3e-34 seq55686 87.8 2e-12 >seq54108 Length=1175 Score = 159 bits (176), Expect = 3e-34 Identities = 486/744 (65%), Gaps = 19/744 (3%) Strand=Plus/Minus Query 119134 GGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCATTCGTGGAGTTAGTGAT 119193 ||| | ||||| ||| | | |||| || ||||||| |||||| |||| || | || Sbjct 919 GGACTGCTTGACGGACACCAGGCCACGCGGAGGCTCAATACCATTGGTGGCATTGGCAAT 860 Query 119194 CTGGCTGGATGTCTCGCAAGGCATCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAAT 119253 ||||||||| || || ||||||||| | || ||| |||||||| ||||| || || | Sbjct 859 CTGGCTGGAGGTTTCCGAAGGCATCAAGGCGGTCAGGGTGGAGTTGCGCAGACCGTGCTT 800 Query 119254 CGCGATATCGACACGCAGCTTTTCCCAGTCCATCTTCAGTTCCGCAGTGTGGAGAGCATC 119313 |||| || ||||||| |||||| |||| | ||| | | || | | | || Sbjct 799 GACGATGTCAGCACGCAGGGCTTCCCAATCCAGGTGCAGCGGCTCGTTGCAAATACCGTC 740 Query 119314 CACCTCTTTTTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGTAAGTTGTCTCGTGGAA 119373 || ||||| ||||| |||| | ||||| | || | | || ||||| |||| || Sbjct 739 TACATCTTTCTTGTAGGTGTCGGTAGGCAGCAGTCCATTGGCATAGGTTGTTTCGTCAAA 680 Query 119374 GAGATCACATTTGCCCAGTTCTTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTG 119433 | || || || ||| | || | ||||| || | || ||||| ||||| Sbjct 679 GGCGTCGCAAGGACCGTATTCACGCGACAACTGTACCGAAGCCTTCAACAGGTAGTACTG 620 Query 119434 GAATGCTTCAGCCAGTTCG--TGAACAG--CGTTAGCTGCACGAGGGTCGCTGTACTTCA 119489 || |||||| || || | ||| | ||||| |||||| ||| Sbjct 619 GATGGCTTCA-AAGGTACGGTGGGTCAGGCCCAACGCTGC---CGGGTCGGAGTAACGGG 564 Query 119490 TCCCGCGCTTCGCCAGGTAGTACGCGAGGTTGGTCCAGCCAATCCCCAGTGTACGGCGCA 119549 | ||| ||| ||||||||||| ||| |||| | ||||| ||||| | || ||| Sbjct 563 TGCCGTTCTTGGCCAGGTAGTAAGCGTAGTTGATGACGCCAACGCCCAGGGAGCGACGCT 504 Query 119550 GCTTGGT---CTTCTCTGCCGCCAGAACCGGGTAGTTCTGATAGTCCAGCAGTCGGTCCA 119606 ||||| ||| ||| ||| |||||||||| |||||||||||||| |||| Sbjct 503 TGTTGGTTGCGTTCAGTGCAGCCTTGACCGGGTAGTCCTGATAGTCCAGCAAAGCATCCA 444 Query 119607 GAGCACGAACCA-GTGTACGGACAGGCTCACGCATGTCTTCCAGCTTCTCGATCTTGCCA 119665 |||| ||||| | || | | ||| | | || || ||||| ||| | || Sbjct 443 GAGCGCGAACAATCAGTTCAGCCAGAC-CGTCCAGCTCGTCCAGGGACTCCAGAGCACCC 385 Query 119666 AGGTTAATGGCAGACAGAGTACACAGGGCTACCTCGCCCGGGTCTTCTGGATCGTTAATG 119725 || || | || ||||| || ||||| || | || | |||| |||||||| | Sbjct 384 AGATTGAAAGCCGACAGCGTGCACAGCGCGATTTCAC------CTTCGGGATCGTTCAGA 331 Query 119726 TCGTTGATCGGATGCGTCGGCAGCGCGATCTCCATACACAGGTTGGACTGCTTCACCGGG 119785 ||||| | || | || ||||| || || ||||| |||||||||||||| ||| || Sbjct 330 TCGTTCAAAGGCTTGGTGGGCAGGGCAATTTCCATGCACAGGTTGGACTGGCGCACGGGA 271 Query 119786 GCCTGTTTAGGGTCAAACGGGCTGTTGGTATTACAGTGGTCAACGTGCTGAACATAAATA 119845 || | | | | || ||||||| || || |||||||| |||| ||||| || ||| Sbjct 270 GCGCGGTCGGCCTGGAATGGGCTGTGCGTGTTGCAGTGGTCCACGTTCTGAATGTAGATA 211 Query 119846 CGACCAGTTTGTGAACGCTCCTGC 119869 || || || | |||||| ||| Sbjct 210 CGGCCGGTGCTGGCACGCTCTTGC 187 >seq55686 Length=689 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 146810 TAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAGTCCAGCT 146869 |||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||| || Sbjct 95 TAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCGAGTTCGAATCCCGCC 36 Query 146870 ACACCGACCAA 146880 | |||||||| Sbjct 35 GCCCCGACCAA 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476918630381760