Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq465 122 7e-23 seq10591 116 3e-21 seq21443 113 4e-20 seq16750 91.5 1e-13 seq621 91.5 1e-13 seq53020 84.2 2e-11 >seq465 Length=2116526 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | || ||| | | |||| |||| || Sbjct 2111671 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGT 2111612 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || |||||||||| |||||| || || || || || || || || ||||||||||| Sbjct 2111611 TTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTG 2111552 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | || || ||||| |||| |||||||| || Sbjct 2111551 GCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTG 2111492 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACG 101476 | || || ||||| ||||||||| || || Sbjct 2111491 AGGGTCTTCACAAAGATCTGCATGTTTGCG 2111462 >seq10591 Length=527945 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | || ||| | | |||| |||| || Sbjct 132119 TGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGT 132178 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || |||||||||| |||||| || || || || || || || || ||||||||||| Sbjct 132179 TTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTG 132238 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || | || | |||||| | || || ||||| |||| |||||||| || Sbjct 132239 GCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTG 132298 Query 101447 AAAGTTTTTACAAATATCTGCATGGTT 101473 || |||||||| ||||||||| || Sbjct 132299 TGGGTCTTTACAAAGATCTGCATGTTT 132325 >seq21443 Length=656158 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | || ||||| || || || || || ||||| || | Sbjct 30095 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 30154 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| |||||||| || | | ||| || ||||| ||| Sbjct 30155 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 30214 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || ||||| || ||| |||| | |||||| | ||||| Sbjct 30215 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 30274 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | || || || || |||||||| Sbjct 30275 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 30321 >seq16750 Length=4688092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/212 (69%), Gaps = 11/212 (5%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| ||||| || ||||| || ||||| || | |||| Sbjct 387579 AACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA-----------CATCT 387531 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||||||||| || ||||| |||| | || ||||| || ||||| ||||| ||||| Sbjct 387530 TCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 387471 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| ||||| || | | | ||| || ||||| |||| || Sbjct 387470 TGGATATTGGCCTTTACATTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATGGTC 387411 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||| || || |||||||| Sbjct 387410 TTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 387379 >seq621 Length=1137327 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || | |||||| || ||||| || | || ||| | |||| |||| ||||| || Sbjct 429912 GGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGAGGCCATCCTCCAGCTGCTTGCC 429971 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 |||||||||| |||||| || || || || || || || || ||||||||||| ||| Sbjct 429972 AGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTT 430031 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 | | | || |||| | | || || ||||| |||| || ||||| || | || Sbjct 430032 GAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGT 430091 Query 101452 TTTTACAAATATCTGCAT 101469 || ||||| | |||||| Sbjct 430092 CTTCACAAAGAGCTGCAT 430109 >seq53020 Length=1597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | ||| | | |||| |||| ||| Sbjct 1448 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1507 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || ||||| || ||||||||||||||||| || || Sbjct 1508 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTG 1567 Query 101387 TGTTTTACAATTTCTACAGTGTCA 101410 || ||| |||| | |||||| Sbjct 1568 GCCTTCACATTTTCGATGGTGTCA 1591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395771132936424