Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq465 96.9 3e-15 seq10591 95.1 9e-15 seq23525 87.8 1e-12 seq1776 87.8 1e-12 >seq465 Length=2116526 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||| || || ||| |||||| || || ||||| || || ||| | || Sbjct 2111686 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGG 2111627 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || |||||||||||||| ||||| || || | || | |||||| Sbjct 2111626 CCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCC 2111567 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | || | ||| ||||| | || Sbjct 2111566 TTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 2111507 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| | || || ||||| |||||||| Sbjct 2111506 ATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 2111469 >seq10591 Length=527945 Score = 95.1 bits (104), Expect = 9e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||| || || ||| |||||| || || ||||| || || ||| | || Sbjct 132104 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGCGG 132163 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || |||||||||||||| ||||| || || | || | |||||| Sbjct 132164 CCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCC 132223 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCACCTCCACCG 48726 ||||| ||| ||| | ||| | | || | | | || | ||| ||||| | | Sbjct 132224 TTGTCTTGAAT-TTTGGCTTTGACGTTCTCA-ATGGTGTCACTGGGCTCGACCTCAAGGG 132281 Query 48727 TAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || ||||| ||||| || |||||||| |||||||| Sbjct 132282 TGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCAT 132321 >seq23525 Length=221919 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||||||||| ||||| | | | || | || Sbjct 219795 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 219854 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 219855 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 219914 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | ||||| | || ||||| | || || || Sbjct 219915 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 219974 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | ||||| || ||||||||||| Sbjct 219975 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 220007 >seq1776 Length=1009680 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||||||||| ||||| | | | || | || Sbjct 76294 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 76235 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 76234 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 76175 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || | || ||||| | || || || Sbjct 76174 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 76115 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| | ||||| || ||||||||||| Sbjct 76114 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 76082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380449970349336