Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6252 194 3e-44 seq4156 141 2e-28 seq10346 129 1e-24 seq8820 93.3 8e-14 seq3819 89.7 1e-12 >seq6252 Length=4458365 Score = 194 bits (214), Expect = 3e-44 Identities = 191/245 (78%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||||||||| | || ||||| | || ||||| ||||||||| |||||||||| Sbjct 3358871 AGCAGCTGACAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 3358928 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || | | |||||| | ||||| || ||||| || | ||||||| ||||| Sbjct 3358929 GCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCA 3358988 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 3358989 CCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 3359048 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| | Sbjct 3359049 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGG 3359108 Query 241623 GAGAC 241627 | ||| Sbjct 3359109 GGGAC 3359113 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | |||||| | ||||| ||||||| Sbjct 3358908 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGT 3358967 Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 3358968 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 3359022 >seq4156 Length=7532868 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 5968974 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 5968915 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||| || |||||||||||||||||| |||| |||||| ||||| Sbjct 5968914 TCCGTGTTCTGGCTCTTAAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 5968855 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 5968854 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 5968795 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 5968794 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 5968762 >seq10346 Length=345594 Score = 129 bits (142), Expect = 1e-24 Identities = 544/847 (64%), Gaps = 33/847 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || ||| ||||| |||||||||||||| ||||| | | || || ||||| Sbjct 268986 CTGATACTCCGTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTC 269040 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| || ||||| | | | | | | || || ||| |||| |||||||| Sbjct 269041 CATAAAGTCAAATGGGTTC--TCTACTCTGAAAACCTTGCTCAAACCCA---GTTCCAGC 269095 Query 47957 AGGTGA-TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | || || || || |||| ||||||| ||| || ||| ||||| || || | Sbjct 269096 ATGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGG 269155 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| ||||| |||| ||||| || |||| |||||| | || || | | || Sbjct 269156 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTAT 269215 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | | || | |||| ||||||| |||||| ||| | | || ||| || Sbjct 269216 TTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGA---ACATCAGGCAAGC 269272 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||| || | ||| || || || || | ||| || || | ||||| || ||| ||||| Sbjct 269273 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 269332 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | | ||||||||||| || | || ||| | |||| | |||||||| Sbjct 269333 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAG---AAAAGATGCC 269389 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| |||| || || | | | || || | | ||| | ||||| ||||| Sbjct 269390 TTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCA 269449 Query 48316 G-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||| ||||| |||||||||||||||| || |||||||| || ||||| || || Sbjct 269450 GTGCAAG-GCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGA 269508 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAAC--ATAGGT-AGTG---AGCAGCTTTGCGTACA 48428 | | || | | | | | | | || || |||| | || |||| Sbjct 269509 G------AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACA 269562 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | ||||| || | |||||||| || || ||||| || |||| | ||| || || Sbjct 269563 TTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCA 269622 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| |||||| | |||| ||||| || || ||||| ||||| ||||| || | Sbjct 269623 TCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTG 269682 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 ||||||| | || ||||| | |||| | ||| ||| | | || | | |||| Sbjct 269683 CAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGT 269742 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | | ||| ||| ||||||||| || || | ||||||||||| || || || | Sbjct 269743 GCCAAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCT 269802 Query 48669 TGTACAT 48675 | ||||| Sbjct 269803 TATACAT 269809 >seq8820 Length=2893063 Score = 93.3 bits (102), Expect = 8e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 2560720 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 2560661 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCT 213641 ||| || || | || ||||| ||||||||||| || |||| || || ||| Sbjct 2560660 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCT 2560607 >seq3819 Length=14887386 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 10743832 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTTCTTTTTCGGCACTTGGAGGCA 10743773 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| ||||||||| Sbjct 10743772 GCAATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCA 10743713 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 10743712 ATGGGGGAC 10743704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930309790586880