Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq90861 334 2e-87 seq45019 322 1e-83 seq20436 206 8e-49 >seq90861 Length=1675 Score = 334 bits (370), Expect = 2e-87 Identities = 340/442 (77%), Gaps = 1/442 (0%) Strand=Plus/Minus Query 37989 ATCTCGGGTTTGAATACTGGGAACCCACCGGTGGGGCGATTTCTTCCAATGAACGTAAAT 38048 |||| ||||| |||||||||||||||||||| || || || || | || || || ||| Sbjct 1675 ATCTGGGGTTCGAATACTGGGAACCCACCGGCGGCGCTATCTCCACGAACGAGCGCAAAC 1616 Query 38049 TGGTGACCGGGTACGCTAAATTCCTCGCGGCATTTGGTGGAAACGAAGGCGCACTGCTGG 38108 |||| ||||| ||||| | |||||| || | || || || || || || || ||| Sbjct 1615 TGGTTACCGGCTACGCCAGATTCCTGGCTACGTTCGGCGGCAATGAGCCGGCGCTTCTGA 1556 Query 38109 ATGCTGCCGAGCAGTATCTGGACCGTATCGCCGATAAGCGCGCCGGTAGTATCAGCATCT 38168 |||| || ||||||||||| || || ||||| ||| ||| ||||| || |||||| | Sbjct 1555 ATGCGGCAGAGCAGTATCTCGAGCGCATCGCTGATCGGCGTGCCGGCAGCATCAGCGCGT 1496 Query 38169 GCAAATCCTATGACGCATATCGTGCATGGGTGATCATCGAGTCTGGCCACTACGACGCCA 38228 ||||||||| |||||| ||||| || ||||||| ||||| |||||||||| ||||| | Sbjct 1495 GCAAATCCTTTGACGCCTATCGCGCGTGGGTGACGGTCGAGGCTGGCCACTATGACGCGA 1436 Query 38229 TACAGCTTCCCGACGGCACCCTTCGCAAACACCCCCGCAGCATTGCCTTTGCCAACATGG 38288 | || || ||||||||||| || |||||||| ||||||||||| || || |||||||||| Sbjct 1435 TCCAACTCCCCGACGGCACTCTACGCAAACATCCCCGCAGCATCGCGTTCGCCAACATGG 1376 Query 38289 ACGAAACCGAGTTCCAGCAGCTGTACAAAGCCGCGCTCGATGTTCTGTGGCGCTGGGTAT 38348 ||||||| |||||||| |||||||| | ||||| ||||||||| | ||||||||| | Sbjct 1375 ACGAAACAGAGTTCCATCAGCTGTATCAGGCCGCACTCGATGTTTTATGGCGCTGGATCC 1316 Query 38349 TGTCCCGGGCATTCAAGGACCAGCGTGAAGCGGAAAACGCCGCATCGCAGCTCATGAGCT 38408 || | | | || ||| || || || |||||||| ||||||| |||| | Sbjct 1315 TGCACAAGCCGTTTCGCTCCCATGAGGAGGCCGAGAACGCCGCGGCGCAGCTGATGAATT 1256 Query 38409 TTGCGGGGTGATGGCGATGAAA 38430 ||||||||||| | |||||||| Sbjct 1255 TTGCGGGGTGA-GACGATGAAA 1235 >seq45019 Length=1966 Score = 322 bits (356), Expect = 1e-83 Identities = 787/1184 (66%), Gaps = 40/1184 (3%) Strand=Plus/Minus Query 26487 TTTGCGGTACTCGAGCATACCCAGCTCCAGTAGTTCAGCGGATGCCTCGATGATGGCGAT 26546 |||||||||||| || || || || | || |||||||| ||||| | | ||||||| Sbjct 1962 TTTGCGGTACTCAAGGCGGCCGAGTTCGGGCAGGTCAGCGGAGGCCTCAACGGTGGCGAT 1903 Query 26547 CCAGTGGTAGTTCTCGTCTTTGTTGACGAAAATCCAGAAGAACTGATCCAGCGCTGCGGT 26606 ||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| || Sbjct 1902 CCAGTGGTAGTGCTCATCTTTGTTGACGAAGATCCAGAAAAACTGATCCAGCGCCGCAAC 1843 Query 26607 TTCGCAGTACATAGCCGCGCTCAGGTGATAATCACGTTCAATAATTTCCCGGTGTAGCCT 26666 ||||| ||||| ||||||||||||| ||||| || || || ||||| ||||| | | Sbjct 1842 ATCGCAATACATGCCCGCGCTCAGGTGGTAATCGCGCTCGATGATTTCACGGTGCAAGCG 1783 Query 26667 GGCGCGCAGG---CTTTCCTGCTTAACATTCCACATGCTGATGGTTTTCAGGTCTGCACC 26723 |||||||||| |||| |||| ||||| | |||||||| |||||||||||| || Sbjct 1782 GGCGCGCAGGGCGCTTT---GCTTGACATTACCCATGCTGACGGTTTTCAGGTCGTAGCC 1726 Query 26724 TATACGCACGCCATCCAGGTCGATCTCAAGGTCAGGGCGCACACGAACTTCCAAGCCCGT 26783 ||||||| ||| | || |||||||| || || || || || | ||| | ||| || Sbjct 1725 GATACGCAGGCCTACGGCCTCAATCTCAAGATCGGGACGTACGCGCAGTTCGAGGCCGGT 1666 Query 26784 CTCCTCGTCAAAACCAAAGTAGCTCACCTCAACGGCTCGGCTAGGGTGGGTCAGCAGCA- 26842 || || || | ||| || ||||| ||||| || || || | | | || || |||||| Sbjct 1665 TTCTTCATCGATACCGAAATAGCTGACCTCGACCGCGCG--TTGTG-GGTTCTGCAGCAA 1609 Query 26843 -TG-CCGGCGGTCGGGTGTGCCAGAAGCGCTTTTTGAATATTCAGCGCGGTG-CTCAGCT 26899 || ||| | | ||||| | | || || ||||| | | | | ||| ||| || Sbjct 1608 CTGCCCGACTGATGGGTGGGTGAACAGGGCGCGCTGAAT-TGCCGTGGCGTGTTTCATCT 1550 Query 26900 GCTGGCGGGTGA----CCAGCACTTTTCCTTCCGGGTTATCGCGCCAGGCATCCAGCAGT 26955 || | |||| | || || || || | ||| ||| || | || Sbjct 1549 GCGCCAGCGTGATCGTCTGGCGCTGGTCATT----GCTATTTTTCCATGCGCTGATCACC 1494 Query 26956 TCGTCGGCAAATACGGCATCTGGTTTGACTGCCTTCACGGCCTGGATCATGTCTGCTTTG 27015 |||||||| ||||| || ||| | | || | | | ||| || |||| Sbjct 1493 TCGTCGGCGAATACCGCCGTTGGCAAAATCGTTTTGATACGCGCGGCCATATCCTCTTTA 1434 Query 27016 GTACCGGACACTTTCAGTGGTGCCGGTTTCTGTGC-TTCCTGAGCCACAAGGTCAGGGTT 27074 | ||| || || || ||||| || | || || | | |||| || || | Sbjct 1433 CTGCCGCTGACAGGCAACGGCGCCGGAATC-GCGCGCTCTTTCTCGACAAACTCCGGATC 1375 Query 27075 GATGATTGCCAACTGCTCCAGCAGCGCGTCACGGCTGCCGCTGGTTTTAACCGGCGGCGG 27134 |||| | |||||||| |||||||| ||||| |||| |||| ||||||| | ||||| ||| Sbjct 1374 GATGGTCGCCAACTGTTCCAGCAGTGCGTCGCGGCCGCCGGTGGTTTTCAACGGCGCCGG 1315 Query 27135 CAGGGTGGCGTTGTACTCTTTAATGCATGCCTTCATTGCCGTCGCCGTCTGCTTCTGGTC 27194 ||||||||||||||||||||| ||||| || ||||| ||||| || || || ||| Sbjct 1314 CAGGGTGGCGTTGTACTCTTTGATGCAGGCTTTCATCGCCGTGGCGGTGATTTTTGCGTC 1255 Query 27195 ACCATCAATACGCTGGAAGTCAGCTGGCAGCGCCATATAGTTCTGTGCCG-TTTCTTCCA 27253 | || | ||| || || | ||||||| ||||||| ||| |||| |||| || Sbjct 1254 CTCTGGGATGCTCTGAAATTCCGGTGGCAGCAGCATATAGAACTG-GCCGATTTCGTCAG 1196 Query 27254 GGTTAGCGCCAAGCGGAACCTGCGGCGGCAGGGTGGCGTTGTACTCTTCCAGTAACACCT 27313 ||| |||| |||| | | ||| ||||||||||||| | || || | | || | Sbjct 1195 CGTTGCCGCCCAGCGCATACGGCGCTTGCAGGGTGGCGTTATGCTTCTCGA-TCACGGCG 1137 Query 27314 TG----ATGTCGTCGGCAGACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAG 27369 | | ||| || | | | | |||| Sbjct 1136 CGCAGCGTATCGGCGTCGGTCTG---TTTCGGCAGGGTGGCGTTGTGCTGTTCGATAAAT 1080 Query 27370 GCGCGCAGGGTCGCGGCCGT---TGTGAATGCGCCTTCAGGGATCACCGGTTCAACGCTG 27426 ||||||| ||| || || ||||||||| || || |||||||| || ||||||||| Sbjct 1079 GCGCGCA---TCGATGCTGTATCTGTGAATGCCCCCTCGGGGATCACAGGCTCAACGCTG 1023 Query 27427 AATTCTGCGTCCAGTAGTTCAGGCTGCAACGCCAGCGCATGCACCAAGTTGCCCATGTCC 27486 ||||| ||||||| |||||| | | ||||||||| || ||||| ||| | | Sbjct 1022 AATTCCTCGTCCAGCTTTTCAGGTTCTAGCGCCAGCGCGTGAACCAACGAGCCGAACGTC 963 Query 27487 AGCACCGCTGAGCGCTCTTTGACGATGGTTTTCTCTACGTGGCGCGCATTGAAGTACATC 27546 ||| | | | |||||| |||||||| |||||||| | | | | |||||| Sbjct 962 AGCGCATCGGTGCGCTCGCGCTGTATGGTTTTGATAACGTGGCGGCCGTGGTAATACATC 903 Query 27547 AGCGAAACGCGCGCATCTTTCACCTGGGTTGAGCTGATGCCGTTGGCGGCGTGGTAAACC 27606 || | ||||| || || || || |||||||||||||||| ||| || ||| Sbjct 902 AGGCTGATCCGCGCGTCCTTTGCCATCGTGCTGCTGATGCCGTTGGCGCTGTGATAGACC 843 Query 27607 TCGTTTGGCAGCCCTTCATAGCGGCCTGGCTCGAAATAAGCGGG 27650 ||||| || | | ||| ||||| |||||||| || || || Sbjct 842 TCGTTCGGAATATCCAGATAACGGCCGGGCTCGAAGTATGCAGG 799 >seq20436 Length=3738 Score = 206 bits (228), Expect = 8e-49 Identities = 346/500 (69%), Gaps = 13/500 (3%) Strand=Plus/Plus Query 41816 TTGATTCTTGCCGGGGCTTCCGCACCCGTGAT--TCTCGATCAGTTTCTGGATGAGAAAG 41873 |||||| |||||| || || || || || || | ||| ||||||| ||| || |||| Sbjct 1380 TTGATTGCTGCCGGCGCATCGGCCCCGGTCATGATGTCG--CAGTTTCAGGAAGAAAAAG 1437 Query 41874 AGGGTAACAGCTTGACAGCATATCGCGACGGCGGCGGACTCTGGACCATTTGCCGTGGTG 41933 | || | || |||| ||||| | ||||| | ||| ||||||| |||||| | || | Sbjct 1438 AAGGACAGCGCCTGACTGCATACCAGGACGGAGTCGGCATCTGGACAATTTGCGGCGGCG 1497 Query 41934 CAACAATGGTTGATGGCAAGCCAGTAGTACAGGGCATGAAGCTGTCAGCTGAGAAATGCG 41993 || ||||| | ||| || || || |||| | ||| | || ||| | ||| Sbjct 1498 TGACGATGGTCAACGGCCAGAAGGTTGTGAAGGGTCAGCGCCTGACCGCCGAGCAGTGCA 1557 Query 41994 CCCAGGTAAACGCCATTGAACGCGACAAGGCGCTGGCGTGGGTTGACCGAAATATCAAAG 42053 ||| | |||| || | | |||||||| | ||||| ||||| || |||| | Sbjct 1558 AGCAGATTGACGCAGCAGAGCAGAAAAAGGCGCTCGACTGGGTAGACCGCAACGTCAAGG 1617 Query 42054 TACCACTGACCGAACCACAGAAAGCGGGTATCGCTTCTTTCTGCCCATATAACATCGGCC 42113 || | ||||||||||| || |||| || ||||| || |||||||| | |||||||||| Sbjct 1618 TAACGCTGACCGAACCGCAAAAAGTCGGGATCGCCTCGTTCTGCCCGTGGAACATCGGCC 1677 Query 42114 CCGGAAAATGCTTCCCATCGACCTTCTATAAGCGCATCAACGCAGGTGACCGCATCGGTG 42173 |||||||||||||| | || ||||| || ||| | ||||| || ||||| || || | Sbjct 1678 CCGGAAAATGCTTCACCTCCACCTTTTACAAGAAGCTGAACGCCGGCGACCGTATTGGCG 1737 Query 42174 CATGCGAGGCAATCCGCTGGTGGATTAAAGACGGTGGCCGCGATTGCCGCCTAACCAAAG 42233 | ||| | ||||||| | ||||| |||| |||||| ||||||||| | Sbjct 1738 CCTGCCGAGAAATCCGCCGTTGGATATTCGACGCTGGCCGAGATTGCCGCAT-------- 1789 Query 42234 GCCAGAAGAATGGCTGCTATGGTCAGGTTGAGCGACGGGACCAGGAAAGCGCGCTGGCGT 42293 || |||| |||||| || ||| | | || || || |||||| || ||||| | Sbjct 1790 -CCGTTCGAATAACTGCTACGGGCAGATCGTACGGCGCGATCAGGAAGCCGAACTGGCTT 1848 Query 42294 GCTGGGGGTTAGACCAATGA 42313 ||||||| || ||| ||||| Sbjct 1849 GCTGGGGATTGGACAAATGA 1868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141701441456208