Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq45019 327 3e-85 seq90861 210 6e-50 seq42731 113 1e-20 >seq45019 Length=1966 Score = 327 bits (362), Expect = 3e-85 Identities = 784/1181 (66%), Gaps = 46/1181 (4%) Strand=Plus/Minus Query 25980 TTTGCGGTACTCGAGCATACCCAGCTCCAGTAGTTCAGCGGATGCCTCGATGATGGCGAT 26039 |||||||||||| || || || || | || |||||||| ||||| | | ||||||| Sbjct 1962 TTTGCGGTACTCAAGGCGGCCGAGTTCGGGCAGGTCAGCGGAGGCCTCAACGGTGGCGAT 1903 Query 26040 CCAGTGGTAGTTCTCGTCTTTGTTGACGAAAATCCAGAAGAACTGATCCAGCGCTGCGGT 26099 ||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| || Sbjct 1902 CCAGTGGTAGTGCTCATCTTTGTTGACGAAGATCCAGAAAAACTGATCCAGCGCCGCAAC 1843 Query 26100 TTCGCAGTACATAGCCGCGCTCAGGTGATAATCACGTTCAATAATTTCCCGGTGTAGCCT 26159 ||||| ||||| ||||||||||||| ||||| || || || ||||| ||||| | | Sbjct 1842 ATCGCAATACATGCCCGCGCTCAGGTGGTAATCGCGCTCGATGATTTCACGGTGCAAGCG 1783 Query 26160 GGCGCGCAGG---CTTTCCTGCTTAACATTCCACATGCTGATGGTTTTCAGGTCAGCACC 26216 |||||||||| |||| |||| ||||| | |||||||| |||||||||||| || Sbjct 1782 GGCGCGCAGGGCGCTTT---GCTTGACATTACCCATGCTGACGGTTTTCAGGTCGTAGCC 1726 Query 26217 GATACGCACGCCGTCTAGGTCGATCTCAAGGTCAGGGCGCACACGAACTTCCAGTCCCGT 26276 |||||||| ||| | || |||||||| || || || || || | ||| || || || Sbjct 1725 GATACGCAGGCCTACGGCCTCAATCTCAAGATCGGGACGTACGCGCAGTTCGAGGCCGGT 1666 Query 26277 CTCCTCGTCAAAGCCAAAGTAGCTCACCTCAACGGCGCGGCTCGGGTGGGTT-AGCAGCA 26335 || || || | || || ||||| ||||| || ||||| ||||||| |||||| Sbjct 1665 TTCTTCATCGATACCGAAATAGCTGACCTCGACCGCGCG----TTGTGGGTTCTGCAGCA 1610 Query 26336 --TGCCTG-CGGTCGGGTGCGAGAGCAGTGCTGACTGAATTGCCTGCGCGGTGGCAAGTT 26392 |||| | | | ||||| | || ||| || |||||||||| ||||| ||| Sbjct 1609 ACTGCCCGACTGATGGGTGGGTGAACAGGGCGCGCTGAATTGCC------GTGGCGTGTT 1556 Query 26393 GCTGGTGGGTAACCAGCACTTTC-CCTTCCG--GGTTGTTGC------GCCACGCATCGA 26443 | || | ||||| || || || ||| |||| ||| || || Sbjct 1555 TCATCTGCG---CCAGCGTGATCGTCTGGCGCTGGTCATTGCTATTTTTCCATGCGCTGA 1499 Query 26444 GCAGCTCGTCGGCGAACACTGCATCTGGTTTGACTGCCTT--CACGGCCTGAATCAGATC 26501 || |||||||||||| || || ||| | | || ||| | | || ||| Sbjct 1498 TCACCTCGTCGGCGAATACCGCCGTTGGCAAAATCGTTTTGATACGCGCGG--CCATATC 1441 Query 26502 GGCCTTCGTGCCAGAGACTTTCAGCGGTTGCAGCTTCTGAGC-TTCCTGCGCGACCAGGT 26560 | || |||| ||| || ||| | | || | || || | | |||| | | Sbjct 1440 CTCTTTACTGCCGCTGACAGGCAACGGCGCCGGAATC-GCGCGCTCTTTCTCGACAAACT 1382 Query 26561 CAGGATTGATAATCGCAAGTTGTTCGAGTAGTGCGTCGCGGCTGCCGCTGGTTTTAATCT 26620 | |||| ||| |||| | ||||| || ||||||||||||| |||| ||||||| | | Sbjct 1381 CCGGATCGATGGTCGCCAACTGTTCCAGCAGTGCGTCGCGGCCGCCGGTGGTTTTCAACG 1322 Query 26621 GCGCTGGCAGGGTGGCGTTGTACTCTTTGATGCACGCCTTCATTGCTGTTGCTGTCTTCT 26680 |||| ||||||||||||||||||||||||||||| || ||||| || || || || | | Sbjct 1321 GCGCCGGCAGGGTGGCGTTGTACTCTTTGATGCAGGCTTTCATCGCCGTGGCGGTGATTT 1262 Query 26681 TCTGATCTGCATCGATACGTTGGAATTCAGCTGGCAGCGCCATATAGTTCTGCGCCG-TT 26739 | || | ||| | || ||||| | ||||||| ||||||| ||| |||| || Sbjct 1261 TTGCGTCCTCTGGGATGCTCTGAAATTCCGGTGGCAGCAGCATATAGAACTG-GCCGATT 1203 Query 26740 TCATCCAGGCTAGCGCCCAGCGGCACCAGCGCTGGCAGGGTGGCGTTGTATTCATCCAGC 26799 || || | | ||||||||| | ||||| ||||||||||||| | | || | | Sbjct 1202 TCGTCAGCGTTGCCGCCCAGCGCATACGGCGCTTGCAGGGTGGCGTTATGCTTCTCGATC 1143 Query 26800 AAAGCTTTGA---TATCGTCTGCGCTCAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 26856 | || | ||||| | || || ||| Sbjct 1142 ACGGCGCGCAGCGTATCGGCGTCGGTCTGTT---TCGGCAGGGTGGCGTTGTGCTGTTCG 1086 Query 26857 NNNNNNNNGCGGATCGTTGCCGTGGTGGTAAATGCACCTTCCGGAATTACGGGTTCAACG 26916 ||| |||| ||| || || ||||| || || || || || || |||||| Sbjct 1085 ATAAATGCGCGCATCGATGCTGTATCTGTGAATGCCCCCTCGGGGATCACAGGCTCAACG 1026 Query 26917 CTAAATTCTTCATCGAGCTGTTCTGGCTGCAACGCCAGCGCATGTACCAGGTTTCCCATG 26976 || ||||| || || |||| ||| || | | ||||||||| || |||| || | Sbjct 1025 CTGAATTCCTCGTCCAGCTTTTCAGGTTCTAGCGCCAGCGCGTGAACCAACGAGCCGAAC 966 Query 26977 TCCAGCACTGAGGAGCGCTCTTTGACGATGGTTTTCTCAACGTGGCGCGCATTGAAGTAC 27036 |||| | || |||||| |||||||| ||||||||| | | | | ||| Sbjct 965 GTCAGCGCATCGGTGCGCTCGCGCTGTATGGTTTTGATAACGTGGCGGCCGTGGTAATAC 906 Query 27037 ATCAGCGAAACGCGCGCATCTTTTACCTGGGTGGAACTGATGCCGTTGGCAGCGTGGTAA 27096 ||||| | ||||| || ||| || ||| |||||||||||||| ||| || Sbjct 905 ATCAGGCTGATCCGCGCGTCCTTTGCCATCGTGCTGCTGATGCCGTTGGCGCTGTGATAG 846 Query 27097 ACCTCGTTCGGCAGACCTTCATAGCGCCCAGGCTCGAAGTA 27137 ||||||||||| | | | ||| || || ||||||||||| Sbjct 845 ACCTCGTTCGGAATATCCAGATAACGGCCGGGCTCGAAGTA 805 >seq90861 Length=1675 Score = 210 bits (232), Expect = 6e-50 Identities = 214/274 (78%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 41266 AAAACCTACCGCAGCAAGAAGTGGCTCGCCGCAGTCGGGCAGATCGAACGTTGTGTTCTT 41325 |||| ||||||||||| || ||| | || || |||||||| ||||||| || || | Sbjct 1237 AAAATTTACCGCAGCAAAAAATGGTTGGCGGCCGTCGGGCAAATCGAACAATGCGTGTTG 1178 Query 41326 TGTGGCGCATGGGGAACGCAGGTGGCACACCGGAACGAAGGGAAAGGCATGGGATTAAAA 41385 ||||| |||||||| ||||| || ||||||||||| ||||| || ||||| | ||| Sbjct 1177 TGTGGAAACTGGGGAACCCAGGTCGCGCACCGGAACGAGGGGAAGGGTATGGGGCTGAAA 1118 Query 41386 ACTGATGACTGTGCGACAGCTGCGCTCTGCGTTTGCTGTCATGACAGC-ATTGATAACGG 41444 ||||| ||||| || || || |||||||||||||| || || || || || |||||||| Sbjct 1117 ACTGACGACTGCGCCACCGCGGCGCTCTGCGTTTGTTGCCAC-ACCGCGATCGATAACGG 1059 Query 41445 GAATAAGCTGAACAGG-GAAGAGCGCCGGCAGCTTATGGATCGCGCGATTGTTCTGACAG 41503 || | || | || | |||||||| || ||| | ||||| |||||||| |||||||| Sbjct 1058 CAAAGATCT-ATCACGCGAAGAGCGGCGCCAGATGATGGACCGCGCGATCGTTCTGACGA 1000 Query 41504 TGATTGAAGTTGCCCGCCGCGGGCTGGTGGTGCC 41537 | ||| || | ||||||||||||||||||||||| Sbjct 999 TTATTCAAATAGCCCGCCGCGGGCTGGTGGTGCC 966 >seq42731 Length=1297 Score = 113 bits (124), Expect = 1e-20 Identities = 194/276 (70%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 33505 GCTACAGTCGTACCATCCGGTATCACAGGTTCCATGCTGTCGCCAGTAGCAGGGAAACAC 33564 || || || || || || || || | ||||||||||||| ||| |||||||||||| Sbjct 999 GCCACGGTAGTTCCTTCGGGAATGATTGGTTCCATGCTGTTCCCATGAGCAGGGAAACAT 940 Query 33565 AGGATGCCAGACCCATCTGTGTTAGCTCCAACGCGGCGGAGGGTTGCCTTTGAGAACCTG 33624 || | || ||| | | ||| || || ||||| || || || ||||| ||||| | Sbjct 939 AGAA---CACTCCCTT-TCTGT--GCGCCCACGCGCCGTAGTGTAGCCTTCGAGAATCGC 886 Query 33625 AGCTTAAAACCATTGTGATCTTCG-CTGTGTACGCGTCCATCGCCACACGCAAATTCAAT 33683 | | | || || || | |||||| || || | ||||| || || || | ||| || Sbjct 885 AACATGAAGCCGTTATAGTCTTCGTCTCCATAA-CTCCCATCACCGCAGGCCAGTTCTAT 827 Query 33684 ATCCTTAAGAAATGGCACTTCAACCTCATCAACAGGAAGCGGGGTGTCTTTATCCCATGC 33743 ||| || |||||||||||||| ||||||||| | || | ||| || ||||||| || Sbjct 826 ATCTTTTAGAAATGGCACTTCCACCTCATCATCGGGTAACGGTGTACTGCTATCCCAGGC 767 Query 33744 ATCAACAACTCCCCACTCAGACTCTGGCGGGATGTT 33779 || ||| ||||| ||| ||||| |||||||| Sbjct 766 GTCTACAGTACCCCATTCATTTTCTGGTGGGATGTT 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144868686161152