Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq7942 311 1e-79 seq16313 188 8e-43 seq4328 107 2e-18 seq841 93.3 5e-14 >seq7942 Length=6194911 Score = 311 bits (344), Expect = 1e-79 Identities = 664/987 (67%), Gaps = 15/987 (2%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 || ||| || |||| ||| |||| ||| || | |||||| || |||| || ||||| || Sbjct 1784290 CAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTATTGGC 1784231 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| ||| | || ||||||| || ||| || | || || | ||| || Sbjct 1784230 AAACAAGTGGTG---GTTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATGCACAC 1784174 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || | ||| || ||||| | || || || | || ||||| || Sbjct 1784173 CGAGCGCACGTGGACCCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACATCACCCTC 1784114 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| |||||||| ||||||||||| | || |||||||| || ||||| || | Sbjct 1784113 AAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCGTACTTATG 1784054 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | || || || | || || | ||| | ||||||||| || | || Sbjct 1784053 GCTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCAGAGATACTC 1783994 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| | | ||| ||||| |||| | || | | | | || Sbjct 1783993 ATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGAGTTTTTCATTCTGTAG 1783934 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || ||| | || |||||||| || ||||| || || | ||| | Sbjct 1783933 TACATACCCCACATACTCTCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAGAGGTGT 1783874 Query 160472 ---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | ||| || | |||| | || ||||| | || | ||| || | | Sbjct 1783873 TTCGAGCGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCATTAATGAC 1783817 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | | | ||||| |||||||| | || || | |||||| | ||||| || || || Sbjct 1783816 CTCATACCGCTTTTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTTCCAGGCT 1783757 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| | || | | | ||||||| | |||| || |||||||| || || | ||||| Sbjct 1783756 GTTTTCTCCCATTAACAACTTCAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAGGAAA 1783697 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || |||| || | ||||||| ||||||||| || || |||| | | |||||| | Sbjct 1783696 ATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGAGGTCCTT 1783637 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| |||| || ||||| || |||||||| || || || || || |||| | | Sbjct 1783636 CATGCAGTTAAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCCAATCG 1783577 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA 160825 |||||||||||||| ||| |||||| || |||| || ||| | || | | || | Sbjct 1783576 GCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCTGTCACTGCAGCTAAATAGGA 1783517 Query 160826 CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGC 160885 ||| || | ||| |||||| || | |||||| | ||||||||| |||||||| Sbjct 1783516 -ATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGC 1783460 Query 160886 CCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGG 160945 ||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || ||||| || Sbjct 1783459 CCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCTATTGG 1783400 Query 160946 AAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATA 161005 |||||| | ||| || ||| |||| | | || || || ||||||| ||| | Sbjct 1783399 AAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGATGAAAGA 1783340 Query 161006 ATCACAATCCCGCGTCATGTTGATATA 161032 | ||| || | |||||||| ||||| Sbjct 1783339 AGTACAGTCACCGGTCATGTTTATATA 1783313 >seq16313 Length=2784617 Score = 188 bits (208), Expect = 8e-43 Identities = 227/309 (73%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 168155 AGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAA 168214 ||| | ||| | | |||| || ||||| || || || || || |||||||| |||||| | Sbjct 26984 AGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGACACATGTA 26925 Query 168215 GCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAA 168274 || ||||| ||||||| |||| ||||||| || || | ||||||||| |||| |||| Sbjct 26924 ACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAGTCCCAG 26865 Query 168275 CTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCT 168334 ||| || ||||| | || ||||| | ||| || | || || || ||||||||||| Sbjct 26864 CTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTTCTCGCT 26805 Query 168335 GAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAAC 168394 ||||||| ||||||| || ||||| || || | |||||||| || || ||||| || Sbjct 26804 GAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATCAGGAC 26745 Query 168395 CTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTC 168454 || | | | ||||| || ||||| | ||||| ||||||| |||| | |||| || Sbjct 26744 TTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCTCTCTTTC 26685 Query 168455 ATCTTGAGT 168463 ||| || || Sbjct 26684 ATCCTGGGT 26676 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 ||||||| | ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 29532 GTTTGCCTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 29476 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| || || | ||||| || ||| || || ||||| Sbjct 29475 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTGGTAACAGACGTGGTCCCATTT 29416 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | | || || || || ||||||||||| | | ||||||||||| || Sbjct 29415 GGGTGAGACAGCGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAAGATC 29356 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || |||||||| || || |||| Sbjct 29355 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 29316 >seq4328 Length=3486750 Score = 107 bits (118), Expect = 2e-18 Identities = 219/323 (68%), Gaps = 12/323 (4%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||| | || |||| |||||||| ||| || | ||||| ||| | ||| Sbjct 3254677 TGTCTCAGAAGATCATCCAAACATTGGATGGCAAAGAGGTCAATGTCA------AGCTTA 3254730 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || | || ||||||| || ||| || | ||||| | | Sbjct 3254731 TTGGCAAATAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAAATG 3254787 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || | |||| | || | ||| | ||||| |||| ||||| | || ||| Sbjct 3254788 CACACCGAGTGATTGTGGTCCCCATCGCA--GTGGGTAGGGAGCACCTTTGGAAACATCA 3254845 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || |||||||| || ||| || Sbjct 3254846 CCCTCCAAGTACTGCCACTTGACAAACCTGGCAACGGCATGCATGTCAGA-CAGTCATAC 3254904 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | || | | |||||| || | || |||| ||| | ||| |||| || Sbjct 3254905 TTATGGTTTGTGGAGAGTGAACCGGGGACTTCAGGAATACTCTGGATGGTATCCCAGAGA 3254964 Query 160347 TGTTCGTCGGGGCTGTACGTGTC 160369 || || || ||||||| ||||| Sbjct 3254965 TGCTCATCAGGGCTGTGTGTGTC 3254987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 226/340 (66%), Gaps = 12/340 (4%) Strand=Plus/Plus Query 160618 TGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTT-TATCACGTAC 160676 |||| || |||| ||| | || | ||||| || |||| || ||||| || || ||| Sbjct 3255234 TGACAATTTCTACGTTAGATTTAATGGGAAAATCCATACCACA-AAGTTATACCAAGTAT 3255292 Query 160677 TTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGG 160736 ||||| || ||| | | ||||| ||| ||| || | || ||||| || || Sbjct 3255293 TTCCAGCCTGCAGTCATTGCTTAGTGGTCCTTCACGCAGTTGAGGTCAGCCTGAACCTGG 3255352 Query 160737 CTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACAC 160796 ||||| || || || || || |||| | | || |||| ||||| ||| |||||| Sbjct 3255353 CTCCATGATGCATAAACCACAGTCTCCAATCAGCTCGCCATGAAGACTTTACTGAAACAG 3255412 Query 160797 GACACGATTCCCACCAC---CGCCAGAAAG--AACATCTTATCCGCCTTTCGGTCCACGT 160851 | | | |||| ||| ||| | |||| | | ||| || ||| |||||||| Sbjct 3255413 AATGCAGTGCCCATCACTCCCGCTAAAAAGGGATCCTCTGAT-----TTTTTGTCCACGT 3255467 Query 160852 GCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTA 160911 | | |||| | | ||||||||| ||||||||||| | | ||| | | ||| || | Sbjct 3255468 GAATGCAAAAGAAATTCTGAGGCATATAGATGGCCCTCGGTAGCCTGTAAAGCATTTCAA 3255527 Query 160912 TCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951 |||| ||||| | | ||||| || ||| | ||||||| Sbjct 3255528 TCTTGTGATGAACTGCTATAGAATATGCTGTTTGAAACTC 3255567 >seq841 Length=7332055 Score = 93.3 bits (102), Expect = 5e-14 Identities = 196/290 (68%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || ||| || || |||||||||| ||| || | Sbjct 575399 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAGTGCAAGTCCCCAGC 575455 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | || |||| | || ||| | || |||||| || |||| || || Sbjct 575456 CCCATAAACACAGATAGCCCGCTGGTGGATTCCAGAGCAAGGGCCATAAGGAGCACCCTT 575515 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | | ||| || || | | ||||||||| || | |||||| || | |||||| || Sbjct 575516 ATCGATGTCTCCCTCATGGCCCTGCCACTTGACCAGCCTGGCAATAGAAGTCATGTCTGA 575575 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | ||||||| ||| |||||| | || || | | ||| ||| ||||| ||| Sbjct 575576 GATGTCGTACTTGCGGTGATTGGGAACAGAGCCAGGCATCCACCGTGCA--CGCTGAAGG 575633 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 575634 GTGGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTTACCCATTCAAT 575683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576461368912320