Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq23525 143 5e-29 seq1776 136 8e-27 seq69432 123 5e-23 seq13614 109 1e-18 seq9750 109 1e-18 seq11136 105 1e-17 seq10325 100 6e-16 seq16750 95.1 2e-14 seq9193 91.5 3e-13 seq18922 86.0 1e-11 seq782 86.0 1e-11 >seq23525 Length=221919 Score = 143 bits (158), Expect = 5e-29 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 192305 TAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAA 192363 ||| |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || Sbjct 219776 TAACACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAG 219834 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||| Sbjct 219835 TCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCA 219894 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || |||||||| ||| | |||||| | | Sbjct 219895 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGT 219954 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 219955 TCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 220010 >seq1776 Length=1009680 Score = 136 bits (150), Expect = 8e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 76309 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 76251 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 76250 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 76191 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | ||| | Sbjct 76190 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 76131 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 76130 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 76079 >seq69432 Length=13378 Score = 123 bits (136), Expect = 5e-23 Identities = 169/232 (73%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 12332 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 12390 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 12391 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 12450 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| ||| || | ||| | Sbjct 12451 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAA 12510 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || | | ||||| | || ||||||||||| Sbjct 12511 CCTCGAGGGTGATGGTCTTCCCCATAAGAGTTTTCACGAA-ATCTGCATTTT 12561 >seq13614 Length=2327589 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || | | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 1470663 ACCACCACGAAGTCTCAACGCAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 1470605 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || | | | |||| |||| ||| || ||||||||||| ||| || | | |||| | Sbjct 1470604 ACAAAATCCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCCCTCTTTGCTAAGCAGGAG 1470545 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | ||| | Sbjct 1470544 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 1470485 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || | | ||||| || || |||||| |||| Sbjct 1470484 CCTCAAGAGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCGTTTT 1470433 >seq9750 Length=790633 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || | | ||| | ||||| ||| ||| || || || | |||| Sbjct 138608 ACCACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGA-ATGTTGCAGTCAG 138550 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| | ||||||||||| | ||| || |||||||| | Sbjct 138549 ACAAAGTACGTCCATCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 138490 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| | |||||| | ||| | Sbjct 138489 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCTTATCTGAGGGTTCAA 138430 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || || || || || ||| ||||| | ||| ||||||||||| Sbjct 138429 CCTCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACAAAAATCTGCATTTT 138378 >seq11136 Length=3384853 Score = 105 bits (116), Expect = 1e-17 Identities = 163/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 192311 CACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATA 192370 |||| | ||| | || || ||||| | ||||| |||||| ||||| || ||||| | Sbjct 1795544 CACCACGAAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACA 1795603 Query 192371 ATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG---ATCAGGTG 192427 | || ||| |||| |||| ||| || ||||||||||| | |||||| || | ||| | Sbjct 1795604 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACTAGGAGGAG 1795663 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||| | || || || | |||||| ||| | ||||| | ||| Sbjct 1795664 GAATTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCTGAGGGTTCAT 1795723 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||| | | || ||||||||||| Sbjct 1795724 CCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 1795775 >seq10325 Length=1059448 Score = 100 bits (110), Expect = 6e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 637171 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 637229 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || |||| | Sbjct 637230 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGAT----AG 637285 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| || || || || || |||||||| ||| | ||| | | ||| | Sbjct 637286 GAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAA 637345 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| | || | | ||||| || || |||||| |||| Sbjct 637346 CCTCAAGGGTGATGGTCTGCCCCATAAGGGTTTTCATGAAAATCTGCGTTTT 637397 >seq16750 Length=4688092 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/231 (69%), Gaps = 13/231 (6%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || || || || |||| Sbjct 387595 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 387537 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | |||| |||||||| || ||||||||||| | ||| || |||||||| | Sbjct 387536 A-----------CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 387488 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| | | | || | | ||| | Sbjct 387487 GAATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTATTCAAGGGTTCAA 387428 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | || || || ||||| || || || | ||||| | || |||||||||| Sbjct 387427 CCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 387377 >seq9193 Length=3018222 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || || | ||| | ||||| ||| ||| || || | || ||||| || || | | |||| Sbjct 803305 AACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTG-TAGTCAGACAAAGTACATCCATC 803362 Query 192384 ATCCAATTG--TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 |||| ||| ||| | ||||||||| | ||| || |||||| || |||||||| ||| Sbjct 803363 CTCCAGTTGCTTTTGCTAGCAAAGATCAGTCTTTGCCCATCAGGAGGAATTCCTTCCTTA 803422 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAG---AGTA 192498 || || || || |||||||| | | | |||||| | ||| || || || ||| Sbjct 803423 TCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCTGAGGGTTCAACCTCGAGGTCAGTG 803482 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || | | ||||| || || ||||||||||| Sbjct 803483 ATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 803523 >seq18922 Length=4408181 Score = 86.0 bits (94), Expect = 1e-11 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | || || | ||| | ||| | ||| ||| || || || || |||| Sbjct 376812 ACCACCAGGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGA-ATGTTGTAGTCAG 376870 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || | | |||| |||| ||| || ||||||||||| | |||||| | |||||| | Sbjct 376871 ACA--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAG 376928 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||| ||||| || || || |||||||| ||| | ||| | ||| | Sbjct 376929 GAATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCATGGGTTCGA 376988 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || | || || || | ||| | ||| || || |||||| |||| Sbjct 376989 CCTCGAGGGTGACAGTCTTCCCCG-TAAGGATTTTATGAAAATCTGCGTTTT 377039 Score = 86.0 bits (94), Expect = 1e-11 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | || || | ||| | ||| | ||| ||| || || || || |||| Sbjct 379816 ACCACCAGGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGA-ATGTTGTAGTCAG 379874 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || | | |||| |||| ||| || ||||||||||| | |||||| | |||||| | Sbjct 379875 ACA--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAG 379932 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||| ||||| || || || |||||||| ||| | ||| | ||| | Sbjct 379933 GAATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCATGGGTTCGA 379992 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || | || || || | ||| | ||| || || |||||| |||| Sbjct 379993 CCTCGAGGGTGACAGTCTTCCCCG-TAAGGATTTTATGAAAATCTGCGTTTT 380043 >seq782 Length=6300357 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || | ||| | |||||| ||| || || ||||| | || ||| |||| ||| Sbjct 3450633 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 3450574 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | ||||| ||||||||||| || ||||| || ||||| || || ||||| || || || Sbjct 3450573 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGG 3450514 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || || ||||| || | || | || || || || || ||||| || Sbjct 3450513 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 3450454 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAAAA 192549 ||||| | || || | || ||||||||| | | | ||||| Sbjct 3450453 CCAGTCAGGGTCTTCACGAAGATCTGCATTGTCTAACAAAAA 3450412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983155163113200