Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq23525 145 1e-29 seq1776 136 7e-27 seq11136 107 3e-18 seq9750 100 5e-16 seq9193 87.8 3e-12 >seq23525 Length=221919 Score = 145 bits (160), Expect = 1e-29 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| ||| |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 219771 TTTCTTAACACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 219830 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 219831 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 219890 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||||||| Sbjct 219891 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGA 219950 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 219951 GGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 220010 >seq1776 Length=1009680 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 76318 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 76259 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 76258 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 76199 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 76198 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 76139 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 76138 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 76079 >seq11136 Length=3384853 Score = 107 bits (118), Expect = 3e-18 Identities = 170/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| || || ||||| | ||||| |||||| |||||| Sbjct 1795533 TTTCTTAGCAGCACCACGAAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATT 1795592 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | |||||| || Sbjct 1795593 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTG 1795652 Query 171953 GTCAGGTGGT---ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATC 172009 ||| || |||||||| ||| | || || || | |||||| ||| || || Sbjct 1795653 ACTAGGAGGAGGAATTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTC 1795712 Query 172010 TGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| | ||| | || || || ||||| || || || | ||| | | ||| |||||||| Sbjct 1795713 TGAGGGTTCATCCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 1795772 Query 172070 TTT 172072 ||| Sbjct 1795773 TTT 1795775 >seq9750 Length=790633 Score = 100 bits (110), Expect = 5e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || | | ||| | ||||| ||| || ||| || Sbjct 138617 TTTCTTAGCACCACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTT 138558 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 | || || |||| ||| | || |||| ||| | |||||||| || | ||| || || Sbjct 138557 GCAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTG 138498 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| | ||||||| Sbjct 138497 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCTTATCTGA 138438 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || || || || || ||| ||||| | || ||||||||||| Sbjct 138437 GGGTTCAACCTCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACAAAAATCTGCATTTT 138378 >seq9193 Length=3018222 Score = 87.8 bits (96), Expect = 3e-12 Identities = 168/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| |||| || || | ||| | ||||| ||| || ||| | Sbjct 803280 TTTCTTAGCACCACCATGAAGTGTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTG 803339 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTG--TTTACCAGCAAAAATTAATCTCTGT 171950 || || || |||| | | | || |||| ||| ||| | |||||| || | ||| || Sbjct 803340 -TAGTCAGACAAAGTACATCCATCCTCCAGTTGCTTTTGCTAGCAAAGATCAGTCTTTGC 803398 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 ||||| || |||||||| ||||| || || || |||||||| | | |||||| Sbjct 803399 CCATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCT 803458 Query 172011 GACGATTCTACTTCTAG---AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || | ||| || || || ||| ||||| || || | | ||||| ||||| |||||| Sbjct 803459 GAGGGTTCAACCTCGAGGTCAGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGC 803518 Query 172068 ATTTT 172072 ||||| Sbjct 803519 ATTTT 803523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903947646945600