Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11610 95.1 4e-14 seq10346 93.3 1e-13 >seq11610 Length=4244388 Score = 95.1 bits (104), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| || || Sbjct 2964965 ACCAGTCTCAGCAGTCTTGACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCGTG 2964906 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 2964905 GAAAAAGAACTCGGTGGGTGTGAGGCCGGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 2964846 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||||||| | ||| |||| | ||||| ||||| |||| || || |||| |||| Sbjct 2964845 CTCGGGCCCGTAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 2964786 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 || |||||||| || ||||||||||| || Sbjct 2964785 AATCCGCTTTCCCTCCACGTTCTGCTGCCC 2964756 >seq10346 Length=345594 Score = 93.3 bits (102), Expect = 1e-13 Identities = 365/566 (64%), Gaps = 11/566 (2%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| | || || | || || |||||||||||||| || | ||| | Sbjct 269848 TTTGTCATCTTCCCCACCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCT 269789 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | || || || | ||||| ||| ||||||||| |||| Sbjct 269788 TCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGGACATTTGGCACTGGGAATCCCTG 269729 Query 133196 ACTGGGGATGAAAAACATTTTAT-TTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | | || | | ||||||| | | ||| || | | || ||||| || |||||||| Sbjct 269728 AAGCCCAAGGAGAGAGATTTTATATCCCATG-TTCTGGTTTTCTTTGCAGCAAGTGATGG 269670 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || || |||||| || | || |||| ||||||||| || | |||||||| Sbjct 269669 CATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATGACAGAAGCCCG 269610 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || | ||| | || ||||| || || || || |||||| | ||| | || Sbjct 269609 CTGTTTCTGTGGCTTCCAAATTGCCATAGAGAACATACATTCTGAAATGTATAGTTTCCT 269550 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--AGC 133432 ||||| |||||||| |||||| || | | | | || |||| |||||| | | Sbjct 269549 TATTGACACTTACATAAAAGATCCCAAAGAAAGGGAATTTCTCCTCAATGCCATTGAAAC 269490 Query 133433 GAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGT 133492 || | |||||| | || ||||| | || ||||| | | ||||| |||||| Sbjct 269489 GA--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGAA 269432 Query 133493 GCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGT 133552 || | | || | ||| | || | ||||||| || || ||||| |||| |||| Sbjct 269431 GCTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTTTT---CTGGT 269375 Query 133553 GCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTC 133611 || ||| || || || ||||| || || || || | | ||||| || ||||| Sbjct 269374 -TATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTC 269316 Query 133612 TAACGAACTTATTTCAAGGGACGAGG 133637 || ||||||||| || || |||| Sbjct 269315 CAATGAACTTATTAGCAGAGATGAGG 269290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469836941939784