Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq23525 114 1e-20 seq1776 114 1e-20 seq9750 113 3e-20 seq69432 98.7 8e-16 seq21443 95.1 9e-15 seq16750 91.5 1e-13 seq18355 87.8 1e-12 seq11136 87.8 1e-12 seq10325 82.4 6e-11 >seq23525 Length=221919 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 219795 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 219854 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 219855 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 219914 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || || || || || Sbjct 219915 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 219974 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 219975 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 220010 >seq1776 Length=1009680 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 76294 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 76235 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 76234 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 76175 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || || || || || Sbjct 76174 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 76115 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 76114 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 76079 >seq9750 Length=790633 Score = 113 bits (124), Expect = 3e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || | || ||||||||||| | || | | || || ||| || ||||| Sbjct 138584 ATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTG 138525 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 | ||||||| | |||| |||||||||||| || ||||| || || || || || | || Sbjct 138524 CTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 138465 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| ||||| | | || || |||| || ||||| || ||||| || || | Sbjct 138464 GGCCTTTACATTTTCTGCCTTATCTGAGGGTTCAACCTCAAGGGTGATAGTCTTCCCCCT 138405 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||| ||||| ||||||||||| Sbjct 138404 TAGGGTTTTCACAAAAATCTGCATTTT 138378 >seq69432 Length=13378 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 12347 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 12406 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 12407 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 12466 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| | || || |||| || || || || || || Sbjct 12467 CTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACCTCGAGGGTGATGGT 12526 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | | ||||| || || ||||||||||| Sbjct 12527 CTTCCCCATAAGAGTTTTCACGAA-ATCTGCATTTT 12561 >seq21443 Length=656158 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||| |||| || || || || || || || ||||| || || | | Sbjct 30095 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 30154 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | || | || ||||| || || ||| Sbjct 30155 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 30214 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | ||| || ||| |||| | |||||| | || || Sbjct 30215 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 30274 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || ||||||||||| Sbjct 30275 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 30324 >seq16750 Length=4688092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/216 (69%), Gaps = 13/216 (6%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA-AT 29632 || ||| | |||||| || || || ||||||||||| || || ||| || Sbjct 387580 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTC------------AGACAT 387533 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || | ||| ||||||||| | |||| |||||||||||| || ||||| || || || | Sbjct 387532 CTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 387473 Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 | || | || || ||| ||||| || | | |||| || ||||| || || | Sbjct 387472 CCTGGATATTGGCCTTTACATTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATGG 387413 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 | || || || | |||||| || || |||||||||| Sbjct 387412 TCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 387377 >seq18355 Length=1729477 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| || || ||||| |||| || ||||| || || | Sbjct 213866 CCACCTCACAGACGCAGCACCAGGTGCAGGGTGGACTCTTCCTGGATGTTCTAGTCTG-- 213923 Query 29620 ATGG--TGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 | || ||| ||| || | |||||||| ||| |||||| | ||||| || ||| Sbjct 213924 AGGGACTGCAGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCA 213983 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | || ||||| |||||||| | || ||||||| | || ||||||| || | Sbjct 213984 GGATGCCCTCCTTGTCTTGGATTTCGGCTTTGACATTCTCAGTGGTGTCAGTGGCCTCCA 214043 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || || ||||| | | ||| || ||||| |||| ||| Sbjct 214044 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTCCAT 214092 >seq11136 Length=3384853 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| |||||||| || || ||||||||||| || || || | | || || ||| Sbjct 1795557 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 1795616 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTG---ATCCGGCGGAATACCCTCTTT 29690 || ||||| ||||||||| | |||| ||| ||||| | || ||||| || || || Sbjct 1795617 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACTAGGAGGAGGAATTCCTTCCTT 1795676 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 | || | || | ||| |||||| ||||| || |||| | || || || || Sbjct 1795677 AACCTGGATCTTGGCCTATACATTTTCTATTGTGTCTGAGGGTTCATCCTCGAGGGTGAT 1795736 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || | |||| | || || ||||||||||| Sbjct 1795737 GGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 1795775 >seq10325 Length=1059448 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 637186 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 637245 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||||||||| ||||| || || || || Sbjct 637246 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGAT----AGGAATTCCTTCCTTCTC 637301 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || | |||| || ||||| || || || Sbjct 637302 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAACCTCAAGGGTGATGGT 637361 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || | | |||||| | || |||||| |||| Sbjct 637362 CTGCCCCATAAGGGTTTTCATGAAAATCTGCGTTTT 637397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384726089569512