Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq18206 122 8e-23 seq985 93.3 4e-14 >seq18206 Length=158841 Score = 122 bits (134), Expect = 8e-23 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 |||||||||||||| ||||||||||||||||| ||||| |||||| ||| | | || Sbjct 56755 TTTATGTATTATGTGAATGATGGCGTCTATGGATCATTTAATTGCATACTATATGATCAC 56814 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAAAGAAAAACGC---CTTGAAGACAAAGACTATGTT 21121 || | | | ||| | |||| |||| | || | || || || | ||| Sbjct 56815 GCACATGTAAAGCCCCTTCTGC---AAGAGAGACCTAAACCAGATGAGAAGTATTATTCA 56871 Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||||| ||||| |||| ||||| ||| Sbjct 56872 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATTGGATTGTGGAGCGCTGTGACCTG 56931 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || || | || ||||| || ||| | | |||||||||||||||||||||| Sbjct 56932 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA 56983 >seq985 Length=6397689 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||| Sbjct 2564084 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTG 2564025 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| || ||| | | |||||||||||||||||||||| || | Sbjct 2564024 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGC 2563966 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| | || || || || ||||| ||| || | || | | ||||||| || |||| Sbjct 2563965 TGCTGCCTCTACGTTCAATGGCTT-CCAGAGGCCGACGATCTACTATGTGATGTCAG 2563910 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431 || || ||||| |||| | |||||| || | |||| ||||| | | ||| |||||| Sbjct 2566637 GAAATACAGTTGGTGCAGAGTCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCT 2566578 Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491 ||||| || || || || | |||||| ||| | | |||||| | ||||||||||| Sbjct 2566577 TGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTT 2566518 Query 20492 GATAGTGAAGAAGAGCTTACCAAAATTG 20519 |||||||||| ||| | | ||| ||| Sbjct 2566517 GATAGTGAAGTTGAGTTGATGAAAGTTG 2566490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462937010981760