Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq54108 187 2e-42 seq55686 87.8 2e-12 seq55688 84.2 2e-11 >seq54108 Length=1175 Score = 187 bits (206), Expect = 2e-42 Identities = 497/747 (67%), Gaps = 27/747 (4%) Strand=Plus/Minus Query 119903 GGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAAT 119962 ||| | ||||| ||| | | |||| || ||||||| ||| || |||| |||| ||| Sbjct 919 GGACTGCTTGACGGACACCAGGCCACGCGGAGGCTCAATACCATTGGTGGCATTGGCAAT 860 Query 119963 CTGACTGGACGTCTCGCAAGGCATCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAAT 120022 ||| ||||| || || ||||||||| | || ||| || ||||| ||||| || || | Sbjct 859 CTGGCTGGAGGTTTCCGAAGGCATCAAGGCGGTCAGGGTGGAGTTGCGCAGACCGTGCTT 800 Query 120023 AGCGATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTCCGCAGTGTGGAGGCCATC 120082 ||||||| |||||| ||||||||||| | ||| | | || | || || Sbjct 799 GACGATGTCAGCACGCAGGGCTTCCCAATCCAGGTGCAGCGGCTCGTTGCAAATACCGTC 740 Query 120083 TACCTCTTTCTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGTAAGTGGTCTCGTGGAA 120142 ||| ||||||||||| |||| | ||||| | || | | || || || |||| || Sbjct 739 TACATCTTTCTTGTAGGTGTCGGTAGGCAGCAGTCCATTGGCATAGGTTGTTTCGTCAAA 680 Query 120143 GAGATCACATTTACCCAATTCTTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTG 120202 | || || ||| |||| | || | ||||| || | || ||||| ||||| Sbjct 679 GGCGTCGCAAGGACCGTATTCACGCGACAACTGTACCGAAGCCTTCAACAGGTAGTACTG 620 Query 120203 GAATGCTTCAGCCAGTTCGT--GAACAG--CGTTCGCTGCACGAGGGTCGCTGTATTTCA 120258 || |||||| || || | ||| | |||||| |||||| ||| Sbjct 619 GATGGCTTCAAAG-GTACGGTGGGTCAGGCCCAACGCTGCC---GGGTCGGAGTAACGGG 564 Query 120259 GGCCACGCTTCGCCAGGTAGTATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCA 120318 ||| ||| ||||||||||| || ||||| | ||||| ||||| | || ||| Sbjct 563 TGCCGTTCTTGGCCAGGTAGTAAGCGTAGTTGATGACGCCAACGCCCAGGGAGCGACGCT 504 Query 120319 GTTTAGTC---TTCTCTGCCGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCA 120375 || || ||| ||| ||| ||||| |||| |||||| || | || | ||||| Sbjct 503 TGTTGGTTGCGTTCAGTGCAGCCTTGACCGGGTAGTCCTGATAGTCCAGCAAAGCATCCA 444 Query 120376 ATGCACGAACCAGT-GTACGGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCG 120434 || ||||| | || | | ||| | | || || ||||| ||||| || Sbjct 443 GAGCGCGAACAATCAGTTCAGCCAGACCGTC-CAGCTCGTCCAGGGACTCCAGAGCACCC 385 Query 120435 AGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCCC--CGGG-TCGTTCGGGTCATTA 120491 || |||| || ||||| || ||||| || | ||| || |||| |||||| | || || Sbjct 384 AGATTGAAAGCCGACAGCGTGCACAGCGCGATTTCACCTTCGGGATCGTTCAGATCGTTC 325 Query 120492 ATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACC 120551 | || || | || |||||||| ||||||||||||||||||||||| ||| Sbjct 324 A-------AA--GGCTTGGTGGGCAGGGCAATTTCCATGCACAGGTTGGACTGGCGCACG 274 Query 120552 GGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAA 120611 || || | |||| | ||| ||||| | |||||||||||||| |||| ||| | ||| Sbjct 273 GGAGCGCGGTCGGCCTGGAATGGGCTGTGCGTGTTGCAGTGGTCCACGTTCTGAATGTAG 214 Query 120612 ATACGGCCTGT-CTGAGAACGCTCCTG 120637 |||||||| || ||| | |||||| || Sbjct 213 ATACGGCCGGTGCTG-GCACGCTCTTG 188 >seq55686 Length=689 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 146732 TAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGATTCCAGCT 146791 |||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||| || Sbjct 95 TAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCGAGTTCGAATCCCGCC 36 Query 146792 ACACCGACCAA 146802 | |||||||| Sbjct 35 GCCCCGACCAA 25 >seq55688 Length=1409 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 146569 AAAGTTTAATTGGGGATTAGCTCAGTTGGTAGAGCGCTCGACCGATAATCGAGAGGTCAC 146628 || |||| |||| ||||||||||||||||||||||| || | ||||| || ||||| Sbjct 833 AACGTTTCATTGTGGATTAGCTCAGTTGGTAGAGCGTTCCCCTGATAAGGGAAAGGTCGA 892 Query 146629 TGGTTCAAGTCCGGTATCCCCAACCA 146654 |||||| ||||| ||||| |||||| Sbjct 893 TGGTTCGAGTCCATTATCCGCAACCA 918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476563896723840