Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq6496 107 6e-20 seq16939 98.7 3e-17 seq7082 98.7 3e-17 seq2773 98.7 3e-17 seq782 98.7 3e-17 >seq6496 Length=1565906 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 326906 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 326965 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 326966 TCCCGGGTTTCGGC 326979 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 311093 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 311152 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 311153 CCGGGTTTCGGC 311164 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 162960 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 163019 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 163020 CCGGGTTTCGGC 163031 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | | Sbjct 367952 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAAGTCCCTGGTTCGATC 367893 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 367892 CCGGGTTTCGGC 367881 Score = 89.7 bits (98), Expect = 2e-14 Identities = 65/73 (89%), Gaps = 3/73 (4%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGA--AGATCT-AAAGGTCCCTGGTTCA 2825 |||||| ||||||| |||||||||| ||||||||| ||| || |||||||||||||||| Sbjct 368659 GCTGAAATAGCTCAATTGGGAGAGCGTTAGACTGACGAGACCTTAAAGGTCCCTGGTTCA 368718 Query 2826 ACCCCGGGCTTCA 2838 |||||||| |||| Sbjct 368719 ACCCCGGGTTTCA 368731 Score = 86.0 bits (94), Expect = 2e-13 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGG-GAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 || ||| |||||||||| | |||||| ||||||||||||||||||| |||||||||||| Sbjct 351576 GCCGAAATAGCTCAGTTTGCGAGAGCGTTAGACTGAAGATCTAAAGTTCCCTGGTTCAAT 351635 Query 2828 CCCGGGCTT 2836 |||||| || Sbjct 351636 CCCGGGTTT 351644 Score = 82.4 bits (90), Expect = 2e-12 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||| |||| |||||||||||||||||| |||||||||| ||||| ||| |||||||| Sbjct 1440036 ATGGTTGAAATAGCTCAGTTGGGAGAGCTTTAGACTGAATATCTACAGGCTTCTGGTTCA 1439977 Query 2826 ACCCCGGGCTTCAGC 2840 | || ||| ||| || Sbjct 1439976 ATCCTGGGTTTCGGC 1439962 >seq16939 Length=3264617 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2345600 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2345659 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2345660 CCGGGTTTCGGC 2345671 >seq7082 Length=1938508 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1007499 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1007558 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1007559 CCGGGTTTCGGC 1007570 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1016307 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1016366 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1016367 CCGGGTTTCGGC 1016378 >seq2773 Length=798030 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 589760 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 589819 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 589820 CCGGGTTTCGGC 589831 >seq782 Length=6300357 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3435361 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3435420 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3435421 CCGGGTTTCGGC 3435432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15831392177640