Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1776 120 3e-22 seq23525 114 1e-20 seq69432 111 1e-19 seq21443 111 1e-19 seq9750 102 7e-17 seq465 98.7 9e-16 seq10325 91.5 1e-13 seq10591 89.7 5e-13 seq621 82.4 7e-11 >seq1776 Length=1009680 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 76308 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 76249 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 76248 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 76189 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||| || | ||| ||| Sbjct 76188 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 76129 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || ||||| | |||||||| || ||||||||| || Sbjct 76128 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 76078 >seq23525 Length=221919 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 219781 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 219840 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 219841 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 219900 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||| || | ||| ||| Sbjct 219901 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 219960 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || || || | |||||||| || ||||||||| || Sbjct 219961 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTTG 220011 >seq69432 Length=13378 Score = 111 bits (122), Expect = 1e-19 Identities = 164/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 12333 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 12392 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 12393 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 12452 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | | | || | ||| ||| Sbjct 12453 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACC 12512 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || ||| | | ||||||||| || ||||||||| || Sbjct 12513 TCGAGGGTGATGGTCTTCCCCATAAGAGTTTTCACGAA-ATCTGCATTTTG 12562 >seq21443 Length=656158 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 30130 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 30189 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| ||| || ||||| | | Sbjct 30190 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 30249 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 30250 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 30309 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 30310 GAAGATCTGCATTTTG 30325 >seq9750 Length=790633 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||| | ||||||| | ||| | ||| |||||||||||||||| | || | | Sbjct 138607 CCACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGAC 138548 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| |||| || ||||| |||| | ||||| || | |||| Sbjct 138547 AAAGTACGTCCATCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 138488 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | || | || | ||| ||| Sbjct 138487 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCTTATCTGAGGGTTCAACC 138428 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || ||| | | ||||||||||| ||||||||| || Sbjct 138427 TCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACAAAAATCTGCATTTTG 138377 >seq465 Length=2116526 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | |||||||| || | || ||| || || |||||||| || | Sbjct 2111695 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 2111636 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||| || || |||||||||| ||||||||||| | || Sbjct 2111635 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 2111576 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| | ||| ||| || || | | | | | ||||| || | || || Sbjct 2111575 ATACCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 2111517 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| ||||| ||||| | || |||||||| |||||||| Sbjct 2111516 CTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 2111469 >seq10325 Length=1059448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 637172 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 637231 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||||| | |||| Sbjct 637232 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGAT----AGGA 637287 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||| || | ||| ||| Sbjct 637288 ATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAACC 637347 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || | ||| | | ||||||| || |||||| || || Sbjct 637348 TCAAGGGTGATGGTCTGCCCCATAAGGGTTTTCATGAAAATCTGCGTTTTG 637398 >seq10591 Length=527945 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | |||||||| || | || ||| || || |||||||| || | Sbjct 132095 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAG 132154 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||| || || |||||||||| ||||||||||| | || Sbjct 132155 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 132214 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| | ||| ||| |||| ||| | | ||||| || | || || Sbjct 132215 ATACCCTCCTTGT-CTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 132273 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| ||||| ||||| || || ||||| |||||||| Sbjct 132274 CTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCAT 132321 >seq621 Length=1137327 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 ||||| |||||||| || | | || | | || ||||||||||| || ||||||||| Sbjct 429922 TTTTGGATGTTGTAGTCTGAGAGAGTGAGGCCATCCTCCAGCTGCTTGCCAGCAAATATC 429981 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 | ||||||||||| | || | | |||||||| | ||| ||| |||| | || | Sbjct 429982 AGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT-CTTGAATTTTGGCTTTGAAATTCTC 430040 Query 35669 A-CCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAA 35727 | |||| || | || ||||| | ||||| || || ||||| | || |||||||| Sbjct 430041 AGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAA 430100 Query 35728 TATCTGCAT-TCTG 35740 | |||||| |||| Sbjct 430101 GAGCTGCATATCTG 430114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450201753082560