Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq465 113 5e-20 seq21443 111 2e-19 seq10591 109 6e-19 seq23525 102 8e-17 seq1776 102 8e-17 seq782 93.3 4e-14 seq53020 91.5 1e-13 seq69432 89.7 5e-13 seq17275 82.4 8e-11 >seq465 Length=2116526 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||||||| ||||| || ||||| || || || ||||||||||| Sbjct 2111695 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 2111636 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| ||||| |||| ||||||||| || || || Sbjct 2111635 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 2111576 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||||||||| |||||| || | ||||| | || || Sbjct 2111575 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 2111516 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || |||||||| || || | || || || || || ||||| || Sbjct 2111515 TCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 2111466 >seq21443 Length=656158 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || || || ||||| || ||||||||||| | Sbjct 30095 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 30154 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| ||||| || Sbjct 30155 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 30214 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| || || || | ||||| | ||||| Sbjct 30215 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 30274 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || ||||| || ||||||||| Sbjct 30275 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 30325 >seq10591 Length=527945 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||||||| ||||| || ||||| || || || ||||||||||| Sbjct 132095 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAG 132154 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| ||||| |||| ||||||||| || || || Sbjct 132155 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 132214 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||||||||| |||||| || | ||||| | || || Sbjct 132215 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 132274 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || |||||||| || || || || || || || ||||| || Sbjct 132275 TCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATGTT 132324 >seq23525 Length=221919 Score = 102 bits (112), Expect = 8e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || || || ||||||||||| |||||||| | ||| || | Sbjct 219790 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAA-AGTACG 219848 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | |||||||| || || || ||||| Sbjct 219849 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 219908 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | || || || | ||| || ||||| || Sbjct 219909 CTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGT 219968 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | ||||| |||||||| ||||||||| Sbjct 219969 GATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTTG 220011 >seq1776 Length=1009680 Score = 102 bits (112), Expect = 8e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || || || ||||||||||| |||||||| | ||| || | Sbjct 76299 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAA-AGTACG 76241 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | |||||||| || || || ||||| Sbjct 76240 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 76181 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | || || || | ||| || ||||| || Sbjct 76180 CTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGT 76121 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | ||||| |||||||| ||||||||| Sbjct 76120 GATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 76078 >seq782 Length=6300357 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| || | ||| || ||||| || || || ||||||||||| | |||| | Sbjct 3450639 CGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 3450580 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || |||||||| || ||||| ||||| | |||||| || || || |||||||| || Sbjct 3450579 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 3450520 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || ||| ||||| || | ||||| | || || ||||| || ||| Sbjct 3450519 TCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 3450460 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || | || || ||||| || |||||| Sbjct 3450459 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 3450424 >seq53020 Length=1597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || ||||| || || || ||||| || ||||||||||| | Sbjct 1424 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 1483 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| ||||| || Sbjct 1484 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 1543 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||||||||| ||||| || || Sbjct 1544 ATGCCTTCTTTATCTTGGATCTT 1566 >seq69432 Length=13378 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || || || ||||||||||| |||||||| | ||| || | Sbjct 12342 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAA-AGTACG 12400 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | |||||||| || || || ||||| Sbjct 12401 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 12460 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | | || || | ||| || ||||| || Sbjct 12461 CTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACCTCGAGGGT 12520 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || | | |||||| ||| |||| ||||||||| Sbjct 12521 GATGGTCTTCCCCATAAGAGTTTTCACG-AAATCTGCATTTTG 12562 >seq17275 Length=3305369 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 21436 ACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATAAAATTAAAA 21495 || ||| | ||||||||||||||||||||||||| | |||||||| |||||||| |||| Sbjct 1154311 ACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAA 1154252 Query 21496 GGATT 21500 ||||| Sbjct 1154251 GGATT 1154247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504734862440640