Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10346 293 3e-74 seq1811 241 2e-58 seq985 129 8e-25 seq17275 120 4e-22 seq8820 109 8e-19 seq3648 107 3e-18 >seq10346 Length=345594 Score = 293 bits (324), Expect = 3e-74 Identities = 628/934 (67%), Gaps = 17/934 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| |||||| |||| || | |||| ||| ||| | | ||||| |||||||| Sbjct 268926 TTTAGAAGTCAGCATCCAAGGTAAAAA-ATTCTCTGTTGGACTTGACACCACTCCCATCC 268984 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || | ||||| || || || || ||| || ||| ||||| | Sbjct 268985 TCTGATACTCCGTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCT 269039 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| || || | | | | || | || || | ||| || Sbjct 269040 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCATG- 269098 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| ||||| || |||||| ||||| | |||||||| || || | | Sbjct 269099 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 269157 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | ||||| || || || || | ||| || || || | | ||||| Sbjct 269158 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 269217 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||||| || || ||| || | | ||||| ||||| | ||| || || | Sbjct 269218 CTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAAT 269277 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| ||||||||||| ||||| | ||| || ||||||||||| |||||||| | Sbjct 269278 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 269337 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||| | |||||||||| ||||||| Sbjct 269338 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCG 269394 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCT 39803 |||| ||||| | |||| | || || || | | || || | ||||| | | Sbjct 269395 CTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCA 269454 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| || |||||||| ||||||||||| ||||| || ||||| | |||| | | Sbjct 269455 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAATT 269514 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||| | || || || || | | |||||||||||| ||||| | Sbjct 269515 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGTA 269574 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 |||| || || || || || || || | ||||| | ||||| || || || || ||| Sbjct 269575 TGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTT 269634 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||||| ||| |||| |||||||| ||||| |||||||| || ||||| || ||| Sbjct 269635 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 269694 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||||| ||||||| | | || | ||| ||| | ||||| || || | Sbjct 269695 GAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGTGCCAAATGTCCT 269754 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || | || || || || || ||||| || || || || ||||| || ||||| | || Sbjct 269755 TGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCC 269814 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | || | | || || || ||||| Sbjct 269815 AGATATCATGGTACTCGGTGGGGAAGATGACAAA 269848 >seq1811 Length=1713758 Score = 241 bits (266), Expect = 2e-58 Identities = 399/566 (70%), Gaps = 14/566 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||| ||| |||| |||||||| || ||||| | ||| || ||||||||||| Sbjct 78118 GCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAG 78059 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 ||||||||| || || || || |||||||| ||||| |||||||| ||||||||| | Sbjct 78058 TCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCA 77999 Query 39736 GATGCCTTCTACTGCTGCAAA---TGCAACAAG-TCTCTCTCCGTAACTTGTATCATTAT 39791 | ||| ||| ||| ||||| ||||||| | |||| | ||||| | | | || Sbjct 77998 GGTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAACGTCT-TTGTTCC 77940 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | | ||||| | || |||||||| |||| |||||||||||| || |||| Sbjct 77939 CAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCAT 77881 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||||| | | |||| | |||||||| || ||| || || | ||| ||| | Sbjct 77880 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGATTATTTA 77823 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || ||||| ||||||| || || | || || || || || || | ||| |||| Sbjct 77822 TGTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 77763 Query 39972 TTTGTACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 | || | || ||||| |||| |||| |||| ||||||| ||||| ||||||| || Sbjct 77762 TCTGAATTTCTTGAAC-AAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 77704 Query 40031 GCAAAAAATGCC--AATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 ||||| || ||| |||| | | | ||||||||| |||| || || ||| | || Sbjct 77703 GCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCC 77646 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| || || || || | || ||||| | || |||| || || ||||| | | Sbjct 77645 AGTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTT 77586 Query 40149 TTTTGTACATGTTCCATATATCACGA 40174 | || ||| | ||||| |||||| || Sbjct 77585 TCTTATACGTTTTCCAAATATCATGA 77560 >seq985 Length=6397689 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||||||||||| |||||||| || || || || | Sbjct 2227123 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2227064 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 2227063 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2227004 Query 39759 CAACAA 39764 | |||| Sbjct 2227003 CTACAA 2226998 >seq17275 Length=3305369 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 1143213 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1143154 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 1143153 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1143094 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 1143093 ACCACTCTTTCCCC 1143080 >seq8820 Length=2893063 Score = 109 bits (120), Expect = 8e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || |||||||| || | Sbjct 2541362 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 2541303 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 2541302 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 2541243 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || | ||||| || |||||||||| Sbjct 2541242 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 2541195 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 |||| ||| || || || | || |||||| ||| | || | ||| |||||||| || Sbjct 2555537 CCAGCAATGTAGCTGCCAGTAGCCCGAATACAACTCACAGCAACACCAATTCCTCCAGCA 2555478 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 |||||| || | ||||| | || | |||||||| || || || ||||| |||||| Sbjct 2555477 GATTTAGAAATCAATGCACACTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATCT 2555418 Query 69949 ATCATGTTAAGAAGAAAACAGCTA 69972 |||| | ||||||||||||||| Sbjct 2555417 TTCATACTCAGAAGAAAACAGCTA 2555394 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||| ||||| || ||||| |||||||||||||| | || |||||||||| | | Sbjct 2559107 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 2559048 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || || || | || || ||||||| || Sbjct 2559047 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 2558988 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 2558987 TCCAGGTAAATAGC 2558974 >seq3648 Length=3343546 Score = 107 bits (118), Expect = 3e-18 Identities = 241/356 (68%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || ||| |||| | || ||| ||||| | Sbjct 2094918 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTATCATCCAAAGCTTGAACTTCTTC 2094977 Query 37407 CAGATCAGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTA 37465 | || |||||| | | | |||| | || ||||| || ||| ||| ||| | || | Sbjct 2094978 TATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTGA 2095037 Query 37466 TTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTT 37525 || ||| || ||| ||| || | ||| | || |||| ||| || |||||||||| Sbjct 2095038 CTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCTT 2095097 Query 37526 CATCGATTACTCCGCCTCCTACATCAATA---CCTTTTAGAGACAAACCCGATCTAGGAG 37582 || | || || || |||||||||||||| |||| || ||| || || | |||| Sbjct 2095098 CACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGGAG 2095157 Query 37583 CTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTC 37642 ||| |||||||||||| |||| | ||| |||| || |||| | ||| | | Sbjct 2095158 CTACTCTTCCATAACACCCAGAAGGCAGCGCTATCTGAATGTCCATTTTCA-CAAGAG-C 2095215 Query 37643 TTTCTCCA-GGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697 |||||||| | | || || ||||| || || || || | || || |||||||| Sbjct 2095216 TTTCTCCATAGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 2095271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686006957436480