Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10346 244 8e-60 seq1811 188 6e-43 seq985 113 4e-20 seq2874 98.7 8e-16 seq4507 96.9 3e-15 seq17275 86.0 5e-12 >seq10346 Length=345594 Score = 244 bits (270), Expect = 8e-60 Identities = 612/915 (67%), Gaps = 26/915 (3%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| | | | |||||| | || || | | || ||||| || |||| Sbjct 269871 TGCTGAGAGAAAACTCCTGGCGCTTTGTCATCTTCCCCACCGAGTACCATGATATCTGGC 269812 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || | || || || ||||| || || || || || || | || | Sbjct 269811 AGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGG 269752 Query 43797 AC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || || |||| | ||| | | | || ||| | || | | |||||||||| ||| | Sbjct 269751 ACATTTGGCAC-TGGGAATCCCTGAAGCCCA-AGGAGAGAGATTTTATATCCCATGTTCT 269694 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||||||| ||||| || ||| || Sbjct 269693 GGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCA 269634 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||||||| | ||||||| || ||||| | ||| || |||||||||||||| || || Sbjct 269633 AGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATAGAGAACAT 269574 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| |||||||| ||| | || || || || ||||| |||||| | || | | | Sbjct 269573 ACATTCTGAAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAAAGAAAGGGA 269514 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 | | ||||| || ||||| | ||| | || | || ||||| |||||| | Sbjct 269513 ATTTCTCCTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTT 269454 Query 44095 TAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 | ||||| | | | | | | | ||| ||||| |||| | ||||| | | Sbjct 269453 GCACTGGATTGGGGACAAAGAAGCTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGC 269394 Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 |||||||| ||||||| || | ||||| | ||||| ||| | ||||||||||| | Sbjct 269393 GGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACT 269337 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 ||||||||| | || ||||| ||||| | || || | ||||| || ||||| || || Sbjct 269336 GATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGA 269277 Query 44272 TTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTAC 44331 |||||||||| || | | | | || | | || || | | || ||| | | | Sbjct 269276 TTTTGCTTGCCTGATGTTCAAACACCTGGTACAC--AAACCACTGGAGT-AGAGAGTAAG 269220 Query 44332 AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGT 44391 ||| || || | | || || ||||||||| ||||| | || || || ||||| Sbjct 269219 AGAAATAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTTGCCTGT 269160 Query 44392 AAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATC 44450 || || || ||||| || || | | ||||| ||||| ||||| | | ||||| Sbjct 269159 GAAGCCTATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGACA 269101 Query 44451 GTTTAC-TTTTGGAACTGGGTTGCGATAAACACTAT-ATTGTACAAAACCCGTTTGATTT 44508 | || | |||||||||||| || || | | | ||| | ||||| ||||| || Sbjct 269100 G---ACATGCTGGAACTGGGTT-TGAGCAAGGTTTTCAGAGTAGAGAACCCATTTGACTT 269045 Query 44509 TATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATA 44568 |||||| |||||||| || ||| || ||||| ||||| || | || || || Sbjct 269044 TATGGAGAATATTTCACTGAAAG-----ACGAACTTCTTTGAGAAGAGAGTAACGGAGTA 268990 Query 44569 TCAGCGAATGGGCGT 44583 |||| | ||||| || Sbjct 268989 TCAGAGGATGGGAGT 268975 >seq1811 Length=1713758 Score = 188 bits (208), Expect = 6e-43 Identities = 387/568 (68%), Gaps = 12/568 (2%) Strand=Plus/Plus Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 |||||| || ||| ||| ||| || |||| | ||| || || |||| || | ||||| Sbjct 77560 TCATGATATTTGGAAAACGTATAAGAAAGTAGAGGTTTCTTTCTGGATGGCCCAGGAAGT 77619 Query 43783 TGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840 || || | || ||| || |||| ||| || | || || | |||| | ||||| Sbjct 77620 GGACCTGTCCAAGGACATTTGGCAC--TGGGAAGCCCTGAAGCCTGAGGAAAGATATTTT 77677 Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900 ||||| | || |||| || ||||| || | || |||||||| ||||||| ||||| Sbjct 77678 ATATCCTATATTCTGGCTTTCTTTGCAGCATGTGATGGGATAGTAGATGAAAACTTGGTG 77737 Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959 | |||| |||||| |||| ||||| |||| | || || ||||| || |||| Sbjct 77738 GAACAATTTGTTCAAGAAATTCAGATTAC-AGAAACCTTCTGCTTCTATGGCTTCCAAAC 77796 Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| |||||||| | ||||| || || | | ||| || || || || |||| ||||| Sbjct 77797 TGCTATAGAAAACACACATTCTGACATAAATAATCTCCTTATTGACAC--ACATTAAAGA 77854 Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079 | | || | | | | || ||||| || |||||| | |||| | | || | || Sbjct 77855 TAACAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAACAATGCCTGTG-TCAAGAAGAA 77913 Query 44080 AGCAGACTGGGCCCTTAAATGGATA---AATTCAAATGATTCTTTTGGAGAACGACTTGT 44136 |||| |||| | | | ||||| || | | | | | ||||||||| ||| Sbjct 77914 GGCAGTTTGGGTCTTGTATTGGATTGGGAACAAAGACGTTACCCATGGAGAACGTGTTGC 77973 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 |||||||| | |||||| ||| | |||||| || || ||||| ||||| ||| | Sbjct 77974 AGCGTTTGCCCTAGTGGAAAGCACCTGCTTTTCTGGTTCTTTTGCACTGATATTCTGGCT 78033 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||||||||| |||||||||| | || ||||| ||||| | || || ||||||| Sbjct 78034 CAAGAAACGAGGACTGATGCCTGGACTCACATTTTCCAATGAACTTATTAGCAGTGATGA 78093 Query 44257 AGGCTTACATTGCGATTTTGCTTGCTTG 44284 || ||||| || | ||||||||| || Sbjct 78094 GGGTTTACACTGTTACTTTGCTTGCCTG 78121 >seq985 Length=6397689 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 2224914 CAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 2224972 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 2224973 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 2225021 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 2226988 GGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 2227047 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 2227048 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 2227107 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 2227108 ATCAGCAGAGATGA 2227121 >seq2874 Length=3733233 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| || || ||| | || ||||| || || || |||| |||| Sbjct 1920409 TGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 1920468 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || ||||| || |||||||| ||||| || || || ||||| || | Sbjct 1920469 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTCAACATCGCCA 1920528 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| |||||||| ||| Sbjct 1920529 GCTACGCCCTGCTCACGTACATGATTGCGCAC 1920560 >seq4507 Length=312631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 197/290 (68%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453 |||| || || | |||||| | | ||| || ||||| | |||||| || || ||||| | Sbjct 13867 TCCACCCATTTTCCTTCCAACTTTGAACACAGTTAGTTATACCATTTATAGTAAACATAC 13926 Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513 ||||||| || | ||||| || |||| || | ||| ||||||| | |||||| Sbjct 13927 TGTCTGTATACAGAACCAGTTTACTGATGTTTTGAGCCTTTGCTTGTTCAATGGCTTTGC 13986 Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACAT 77573 | ||||| || ||||| || | |||||||||||| |||| ||||| | |||| Sbjct 13987 AGGCAGCATGAATTTCTGCTCTTTGGTTTGTCTGTCGCCCAGGAAGTCTAATGCCTACAT 14046 Query 77574 TAAGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCG-GGCTTGTTTCTGTCCG 77632 | | || || ||||| || |||| || || ||| | ||| | | | | || Sbjct 14047 TTAAAGGATGGCCCGGCCCCCAGTAAACGCAGATTCCTGCTTGTGGCCT-TCTACGCCCA 14105 Query 77633 TTTGATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682 || || | ||||| ||||||||||| || || ||| |||||||| Sbjct 14106 TTACTGGAGAAGCAGCCATCAGTGTAGACAACAACAAAGTCTCCCATGTA 14155 >seq17275 Length=3305369 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| ||||| | ||| || ||| ||||||| ||| | ||||||| Sbjct 1129631 GGTTTGTCATCTTTCCAATCCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 1129690 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 1129691 CTTCCTTCTGGACAGCAGAAGAGGT 1129715 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 1154245 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 1154304 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 1154305 AACGAGTTTCGGAGTATCAGCG 1154326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396947225517160