Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8217 100 3e-16 seq90356 98.7 1e-15 seq4271 95.1 1e-14 seq985 86.0 7e-12 >seq8217 Length=2671155 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 2356010 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 2356069 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 2356070 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 2356129 Query 117425 ATCGT 117429 || || Sbjct 2356130 ATAGT 2356134 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 2356010 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 2356069 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 2356070 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 2356129 Query 152149 ATCGT 152153 || || Sbjct 2356130 ATAGT 2356134 >seq90356 Length=1608 Score = 98.7 bits (108), Expect = 1e-15 Identities = 242/358 (68%), Gaps = 17/358 (5%) Strand=Plus/Plus Query 124490 GATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGA 124549 ||| ||||| || | ||||| | | || ||| | || ||| | || || || | Sbjct 1127 GATGAACTCGCGCACGCTGTACTGCATGCCGGTGGCGATGACGTAGTCCTCCGGCGTGTC 1186 Query 124550 CTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTT 124609 |||||||| ||| |||||| || ||||||||| || || |||||||||||| Sbjct 1187 CTGCTGCAGCATCAGCCACTGCATTTCGACGTAGTCGCGCGCATGGCCCCAGTCGCGCAG 1246 Query 124610 GGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTGTTC--CAC--TCCG--CCAA 124663 || |||||| || || | | ||| | | | | | | ||| | || ||| Sbjct 1247 CGCCGACAGGTTGCCCAGGTACA--GGCATTCCTG-CAGGCCCAGCACGATGCGGGCCAG 1303 Query 124664 ACCCAGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCG-TCGCTCAGACTCGTGGT 124719 || | || |||||||||||||| || |||| ||||| | | | || ||||||| Sbjct 1304 GCCGCGGGTGATCTTGCGCGTCACGAAGGTCTCG---CCGCGCTTGGGC-GATTCGTGGT 1359 Query 124720 TGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCC 124779 ||||||| || || | || ||| |||| ||||| | |||||||||||| | |||| Sbjct 1360 TGAACAGGATCCCGTTGCAGGCATACATGCCGTAGGCCTCGCGGTAGTTCACGCTGATCC 1419 Query 124780 AATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 | || | | ||||||| | || | |||||||| ||||| ||||| || ||| |||| Sbjct 1420 AGTAGGCGTACAGCTTGGCCGCGGCGTAGGGGCTGCGGGGATAGAACGGCGTGCTTTC 1477 >seq4271 Length=2931503 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||| | || |||||||| Sbjct 1691637 GTGAAGATGTATCGTGGACTAGCGGAATCCTTGCCACCATGCAGTCTGGTACCAAACTGA 1691578 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 1691577 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 1691518 Query 152149 ATCGT 152153 || || Sbjct 1691517 ATGGT 1691513 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| || | || || | ||||||||||||| || | ||||| || || Sbjct 1691637 GTGAAGATGTATCGTGGACTAGCGGAATCCTTGCCACCATGCAGTCTGGTACCAAACTGA 1691578 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 1691577 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 1691518 Query 117425 ATCGT 117429 || || Sbjct 1691517 ATGGT 1691513 >seq985 Length=6397689 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 2227121 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 2227062 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || ||||| |||||||||||||| || |||||||| Sbjct 2227061 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 2227002 Query 74892 ACAAGGCGTT 74901 |||| |||| Sbjct 2227001 ACAACACGTT 2226992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546497560113600