Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2874 134 1e-26 seq38050 107 2e-18 seq1020 105 5e-18 seq3440 98.7 8e-16 seq10198 93.3 3e-14 seq64438 86.0 5e-12 seq2198 82.4 6e-11 >seq2874 Length=3733233 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 1920571 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1920512 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 1920511 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1920452 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 1920451 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 1920408 Score = 123 bits (136), Expect = 2e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 1916404 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 1916345 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 1916344 CCCTTCTTCTCTGGTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 1916285 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| |||||||| | |||||||| || Sbjct 1916284 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 1916237 >seq38050 Length=490 Score = 107 bits (118), Expect = 2e-18 Identities = 184/261 (70%), Gaps = 11/261 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 253 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 194 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTAC-CCATTATCACCACGT 110497 | ||||| |||||| || | ||||||||||||||||| ||| |||| ||||||| | Sbjct 193 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACTCCATAATCACCAGAT 134 Query 110498 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 110556 |||| || ||| |||||||| || | |||| | ||| | || | | | || || || Sbjct 133 TCTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTC 75 Query 110557 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 110615 | || || |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 74 CTGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GA 22 Query 110616 CGCGGCCACGATACCGTTCAG 110636 | | || ||||| | ||| || Sbjct 21 CACAGCGACGATGCAGTTTAG 1 >seq1020 Length=1834505 Score = 105 bits (116), Expect = 5e-18 Identities = 180/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 1061606 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 1061547 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| |||| |||||||| ||||||| || Sbjct 1061546 GAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCCATAATCACCAGATT 1061487 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| | | |||| | ||| | || | | || || || | Sbjct 1061486 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTCC 1061428 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 110617 || ||| |||| ||||| || || || || || |||||||||| | | || Sbjct 1061427 TGAG------CGGAGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTTTGGGACA 1061374 Query 110618 CGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 1061373 CAGCGACGATGCAGTTTAG 1061355 >seq3440 Length=2799305 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 964696 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 964637 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||| ||| ||||||| || Sbjct 964636 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 964577 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||| || ||| |||||||| || | ||||| Sbjct 964576 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 964545 >seq10198 Length=1797438 Score = 93.3 bits (102), Expect = 3e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 30232 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30291 ||| ||||| || |||| |||||||||||| || | || || |||| | | || ||||| Sbjct 1676257 GTATTCTGC-CCAAAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTC 1676315 Query 30292 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30351 | ||| ||| ||| ||||||||||||||| || || ||| | || || || | Sbjct 1676316 TCAGTGGA-GAATCCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCT 1676374 Query 30352 TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30411 || ||||| ||| || ||||| | | |||||| || ||| |||||||||| || Sbjct 1676375 CACTCCCTTGGAAGACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTC 1676434 Query 30412 CTCCA 30416 ||||| Sbjct 1676435 CTCCA 1676439 >seq64438 Length=1527 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| ||| || || |||| |||||| | ||||| | | || | |||| Sbjct 897 TGGGAAAGG-TCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATGTGACTTAGGT 955 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | || | || ||||||| | || ||||| || || || | ||| | |||| ||| | Sbjct 956 AAACATACGCATCTCCCAAAGTATGTACAAAGTCACCGGGCTTTAGGTCCGTGATGTGCG 1015 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||| || ||||| || | ||||||||||||||| ||| | || || | Sbjct 1016 CGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAG--------GTGCACCCAGG 1067 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 30072 |||| ||||| |||| ||||| || || ||||| || | |||| | ||||| Sbjct 1068 CCCCTGACCTTTGGTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAACTG 1122 >seq2198 Length=3459117 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || |||||||| |||| || || || || | ||||| |||||| || || Sbjct 2053888 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCTTGTAAAGGTCGATTCTTCTCAGGA 2053947 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||||||||| ||||||| ||||||| ||||| || ||| Sbjct 2053948 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 2053995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405790291198944