Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq10591 141 8e-29 seq465 141 8e-29 seq21443 109 5e-19 seq621 104 2e-17 seq1313 89.7 4e-13 seq14322 87.8 2e-12 seq23525 86.0 5e-12 seq1776 86.0 5e-12 seq53020 84.2 2e-11 seq2511 84.2 2e-11 >seq10591 Length=527945 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || | || ||||| | || || ||||| || || || Sbjct 132322 CATGCAGATCTTTGTAAAGACCCACACGGGCAAAACCATCACCCTTGAGGTCGAGCCCAG 132263 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| |||||||||||||| || || || ||||| || || Sbjct 132262 TGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCA 132203 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | |||| ||||||||||| ||||||| | || | || || ||||| Sbjct 132202 GCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAA 132143 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | || |||| ||||| |||| |||||||| Sbjct 132142 CATCCACAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCAT 132092 >seq465 Length=2116526 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || ||||| | || || ||||| || || || Sbjct 2111468 CATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCCCAG 2111527 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| |||||||||||||| || || || ||||| || || Sbjct 2111528 TGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCA 2111587 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | |||| ||||||||||| ||||||| | || | || || ||||| Sbjct 2111588 GCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAA 2111647 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | || |||| ||||| |||| |||||||| Sbjct 2111648 CATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCAT 2111698 >seq21443 Length=656158 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 30321 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 30262 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| || || || |||||||| || ||||| || Sbjct 30261 GACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 30202 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 30201 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 30142 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| ||||| || | ||||| || Sbjct 30141 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 30092 >seq621 Length=1137327 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||| | ||||| || || || || |||||| | || || ||||| || || || Sbjct 430109 ATGCAGCTCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 430050 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | | ||||| ||||| |||||||||||||| || || || ||||| || || Sbjct 430049 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 429990 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| || ||||| || |||| || | || | || || |||||| Sbjct 429989 CAGCGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCTCACTCTCTCAGACTACAAC 429930 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| |||| ||| | || ||||| ||| ||| |||||||| Sbjct 429929 ATCCAAAAACAGTCCACCATGCACCTGGTTCTGCACCTGCAAGGTGGCAT 429880 >seq1313 Length=4574001 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || |||||||| || | || Sbjct 662559 ATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCAGT 662618 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | |||| |||||| |||||||||||||| || || || ||||| || || Sbjct 662619 GACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 662678 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 |||| | | ||| ||||||||||| ||| || | | || | || || ||| | Sbjct 662679 CAGCATCTGATACTTGCCGGCAAACAGCTGGGGGATGGCAGGAACTCTCTCAGACTACGA 662738 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||| ||| | || || | |||| |||| |||||||| Sbjct 662739 CATCTGGAAACAGTCCACCCTGCACCTGATGCTGCGCCTGCGAGGTGGCAT 662789 >seq14322 Length=1968782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||| ||||| || || || || |||||| | || |||| || || || Sbjct 1227817 ATGCAGACCTTTGTGAAGACCCTCACAGGCAAGAC-----CT-TTGAGGTCGAGCCCAGT 1227870 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | ||||| ||||| |||||||||||||| || |||| ||||| || || Sbjct 1227871 GACACCACTGAGAATGTCAACGCTAAAATTCAAGACAAGGAGTGCATCCCACCTGACCAG 1227930 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | | ||| || |||||||| |||| || | | || | || || |||||| Sbjct 1227931 CAGCATCTGATACTTGCGGGCAAACAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 1227990 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAAC 27220 || || || ||||| || | || |||| |||| ||| |||||||| || Sbjct 1227991 ATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGCAAGGTGGCATTAC 1228043 >seq23525 Length=221919 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || || ||||| || Sbjct 220007 ATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCCTCA 219948 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || || || || || || ||||| || || || ||||| Sbjct 219947 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 219888 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || ||||| ||| ||||||| | || | || || ||||| Sbjct 219887 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAT 219828 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 219827 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 219781 >seq1776 Length=1009680 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || || ||||| || Sbjct 76082 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCG 76141 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || || || || || || ||||| || || || ||||| Sbjct 76142 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 76201 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || ||||| ||| ||||||| | || | || || ||||| Sbjct 76202 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAT 76261 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 76262 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 76308 >seq53020 Length=1597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || ||||| ||||||||||| || ||||| || ||| | | || | || ||||| Sbjct 1566 AAGATCCAAGATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG 1507 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || ||||||| | || |||| || |||||||| || |||||||||||| | || Sbjct 1506 CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTGCAC 1447 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGC 27215 |||| |||| || |||||||| Sbjct 1446 CTGGTCCTGCGCCTGAGGGGTGGC 1423 >seq2511 Length=2685710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || | | |||| | || || ||||| | || || Sbjct 488529 ATGCAGATCTTTGTGAAGACCCTCATGGACAAGACCATCACCCTTGAGATCGAGCCCAGT 488470 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAA-GGCATACCACCCGATCA 27106 ||| | ||| ||| |||||| |||||||||||||| ||| || || ||||| | || Sbjct 488469 GACACTATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGGTATCCCACCTAACCA 488410 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | ||| | || ||||| |||| || | || | || | ||||| Sbjct 488409 GCAGCGTCTGATACTTTCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACAA 488350 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| || | |||| || | |||| |||||||| Sbjct 488349 CATCCAGAAAGAGTCCACCCTAAACCTGGTGCTGTGCCTGCGAGGTGGCAT 488299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434347395632640