Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2874 165 7e-36 seq64438 102 7e-17 >seq2874 Length=3733233 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || || ||||| |||||||||| ||||| || | ||| Sbjct 1920399 GATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAAC 1920458 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 | ||||||||||||||||| || || |||||||||||||||| |||| ||||| ||| Sbjct 1920459 AGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTC 1920518 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| ||||||||||||||||| || || Sbjct 1920519 AACATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCA 1920559 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||||||||||||||| ||||| || || |||||||| ||||| |||| ||| Sbjct 1920559 TGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCC 1920500 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||||| || || ||||||||||||||||| | ||| | || ||||| ||| Sbjct 1920499 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGG 1920440 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || ||||||||||| ||||| Sbjct 1920439 CAGAGGGCATGGCATGGAGGCAGTGCCATCAGAGGAAGATC 1920399 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || ||||| || ||| ||| ||||| |||||||| || | || || | Sbjct 1916241 CCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 1916300 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||||||| | | | || || || |||||||| || || | Sbjct 1916301 GAGACTTTTTGGACAGCCTGGGGTTCTCCACCAGAGAAGAAGGGGACTTGGGTCCAGTTT 1916360 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 1916361 ATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 1916394 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || || |||||||| || || || Sbjct 1916394 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCT 1916335 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||||||| | |||||| ||||||||| || || | || |||||||| ||| Sbjct 1916334 CTGGTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 1916275 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || ||||| || | || |||| Sbjct 1916274 ACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 1916241 >seq64438 Length=1527 Score = 102 bits (112), Expect = 7e-17 Identities = 175/254 (69%), Gaps = 10/254 (4%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 ||| |||||| ||||| |||| || |||| || ||||| || || | | ||| Sbjct 886 ATTCTGAGCTTTGGGAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATG 945 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || | ||||| | || |||||| ||||| ||||| || | || || || | || Sbjct 946 TGACTTAGGTAAACATACGCATCTCCCAAAGTATGTACAAAGTCACCGGGCTTTAGGTCC 1005 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG-GCACCCC 6672 || || ||||||| || |||||||| ||||| || || |||||||| | |||||| Sbjct 1006 GTGATGTGCGCGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGTGCACCCA 1065 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732 | | || || | ||| | ||||||||||||||||| |||||| | ||| | Sbjct 1066 ---------GGCCCCTGACCTTTGGTGCAGCTGGCAGGACAGCTCACCATTCACCACGAA 1116 Query 6733 GAATTGGCAGAGGG 6746 ||| |||| ||||| Sbjct 1117 GAACTGGCGGAGGG 1130 Score = 102 bits (112), Expect = 7e-17 Identities = 175/254 (69%), Gaps = 10/254 (4%) Strand=Plus/Minus Query 34599 CCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGG 34658 ||||| |||| |||| ||| | |||||| ||||||||||||||||| | ||| | || | Sbjct 1130 CCCTCCGCCAGTTCTTCGTGGTGAATGGTGAGCTGTCCTGCCAGCTGCACCAAAGGTCAG 1071 Query 34659 GAGACATGGGGTTAGGGGTGC-CGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATG 34717 | | | |||||| | |||||||| || || ||||| |||||||| || || Sbjct 1070 GGGCC---------TGGGTGCACCTTCAACATCGCCAGCTACGCCCTGCTCACTTATGTG 1020 Query 34718 ATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 ||||| || || || | || || || | || ||||| ||||| |||||| || Sbjct 1019 ATCGCGCACATCACGGACCTAAAGCCCGGTGACTTTGTACATACTTTGGGAGATGCGTAT 960 Query 34778 ATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTC 34837 | ||||| | ||||| | | || || ||||| || |||| || |||| ||| Sbjct 959 GTTTACCTAAGTCACATTGCGAAACTGAAAATTCAGCTTCAGAGAGAACCAAGACCTTTC 900 Query 34838 CCCCAGCTCAAAAT 34851 || |||||| ||| Sbjct 899 CCAAAGCTCAGAAT 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447673876295040