Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1020 223 3e-53 seq16313 178 1e-39 seq15621 141 8e-29 seq1373 118 9e-22 seq2874 105 6e-18 >seq1020 Length=1834505 Score = 223 bits (246), Expect = 3e-53 Identities = 378/544 (69%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || |||| ||||||||||| || || || | ||||| Sbjct 1061355 CTAAACTGCATCGTCGCTGTGTCCCAAAACATGGGCATTGGCAAGAATGGGGACCTGCCC 1061414 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG---ACATCTTCTTCCACT 2256 |||||||| || | |||||||| | |||| || | |||| ||| ||||||| Sbjct 1061415 TGGCCTCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACACCTTCTTCAGTA 1061474 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || |||| ||||| || |||| | | | Sbjct 1061475 GAAGGTAAACAGAATCTGGTGATTATGGGTAGGTAGACCTGGTTCTCCATTCC--TGAGA 1061532 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| ||| | || || || || | Sbjct 1061533 AGAATCGACCTTTCAAGGATAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 1061592 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | ||| | || | || ||| | || Sbjct 1061593 CACAAGGAGCTCATTTTCTTGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAAC 1061652 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||| ||||||| || ||||| ||| ||| Sbjct 1061653 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 1061712 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | | || | | | || ||| | |||||||| |||| | |||| Sbjct 1061713 AAGCCATGAATCACCCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACTTTG 1061772 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || |||| || | || |||||||| || | ||||| |||| || | |||| | Sbjct 1061773 AAAGTGACAC-TTTTTTTCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATACC 1061831 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 ||||||||| ||||| || ||||| || || || |||| ||||||||||| |||||| Sbjct 1061832 CAGGTGTTCTCTCTGATGTCCAAGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATG 1061891 Query 2675 aaaa 2678 | || Sbjct 1061892 AGAA 1061895 >seq16313 Length=2784617 Score = 178 bits (196), Expect = 1e-39 Identities = 186/243 (77%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 ||| ||| || ||||| | ||||| |||||||| ||| ||||| ||||||||||| Sbjct 26732 AAATGCC-CAGGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAA 26790 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 |||||| ||| || || | |||| ||||| || | ||||| || || || || || | Sbjct 26791 ACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGACAAGA 26850 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| || |||| ||||| |||||| |||| || ||||||||||| | || ||| Sbjct 26851 TAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACCCTGG 26910 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||||||||| |||| |||| | || || || ||||| ||||||||||| ||||||| Sbjct 26911 AGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAA 26970 Query 1510 TAG 1512 || Sbjct 26971 CAG 26973 >seq15621 Length=1628728 Score = 141 bits (156), Expect = 8e-29 Identities = 369/554 (67%), Gaps = 19/554 (3%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACA-AGGGAAAACTGCC 2198 |||||||| || | ||||| || | || || ||||| | || | ||||| ||||| Sbjct 562753 CTAAACTGCATCGTCGCTGTGTCCCAGAACATTGGCATCAGCAAAACAGGGAC--CTGCC 562810 Query 2199 ATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCAC 2255 | ||| || || | ||||| || | |||| || | |||||| | | ||||| | Sbjct 562811 CTAGCCACCGCTCAGGAATGAGTTCAGGTATTTCCAGAGAATGACCACAACCTCTTCAGC 562870 Query 2256 TGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA 2315 || ||||||||| | || |||||||| || |||| ||||| || ||||| || Sbjct 562871 AGAAGGTAAACAGAATCTGGTGATTATGGGTAGGAAGATCTGGTTCTCCCTTCCTGAGAA 562930 Query 2316 AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACC 2375 || | ||||| || |||||||| ||| | |||||||| ||| |||| ||||| || || Sbjct 562931 AAATCGCCCTTTAAAGAACAGAATTAATTTAGTTCTCAGCAGAGACCT-AAAGAACCTCC 562989 Query 2376 ACGTGGGGCTCACTTTGTT-------GCAAAAAGTATAGATCACGCTCTGGAAATTATAA 2428 | || ||| ||| || || | |||| | ||| | || || |||| | ||| Sbjct 562990 AGAAGGAACTCTTTTTTTTTTTTTTTGCCAGAAGTCTGGATGATGC-CTTGAAACT-TAA 563047 Query 2429 TAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCT 2488 || |||||||||| | | || || | ||||||| | ||||||| | | ||| | Sbjct 563048 TA--ACCAGAATTAGCAAATGAAGTAGACATGATTTGGGTGGTTGGTGGTGGTTTTGTTT 563105 Query 2489 -ATGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAA 2547 || |||| ||| | | |||| | | || ||| | |||||||| | || Sbjct 563106 TATAAGGAATCCATGAATCACCCAAGCAATCTTAAACTATTTGTGACAAGGATCATTCAG 563165 Query 2548 AAATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACT 2607 | |||||| |||| |||| || ||||||||| || | ||||| |||| || | Sbjct 563166 GACTTTGAAAGTGACACATTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCA 563225 Query 2608 GAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAG 2667 |||| ||||||| | ||| || || || || || | |||| ||||||||||| Sbjct 563226 GAATACTGAGGTGTTTTCCCTGATGTCCAGGAGGAGAAAGACATTAAGTACAAATTTGAA 563285 Query 2668 ATATATGaaaaaaa 2681 || |||| || || Sbjct 563286 GTACATGAGAAGAA 563299 >seq1373 Length=3888646 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 3847077 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 3847018 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 3847017 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 3846958 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 3846957 ATCGCCCTGTGGATGACTGA 3846938 >seq2874 Length=3733233 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || ||||||||| | || ||||| Sbjct 1920571 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1920512 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| | ||||||||||||| ||||| || ||||| | ||| | Sbjct 1920511 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1920452 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||||||||| |||| Sbjct 1920451 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 1920411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413946237574048