Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq782 86.0 4e-12 seq465 82.4 5e-11 >seq782 Length=6300357 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || || ||||| || || ||||| || || || | || ||||| || Sbjct 3450424 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 3450483 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| ||||| ||| || ||||| ||||| | || || Sbjct 3450484 TGACACCATTGAGAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCTGAC 3450541 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || ||||| || ||||| |||| || | ||||| | |||| || ||| Sbjct 3450542 CAGCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTAC 3450601 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| |||||| |||| |||| ||||| |||| ||| | || || Sbjct 3450602 AACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGG 3450651 >seq465 Length=2116526 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || |||||||| || || || || ||| || || |||| ||||| | Sbjct 2111466 AACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCCC 2111525 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| |||||| ||||| ||||| || ||| | || | Sbjct 2111526 AGTGACACCATTGAGAAT--GTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 2111583 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || |||||||| ||||| |||| || | |||| | || || | Sbjct 2111584 ACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACT 2111643 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| |||||| ||| |||| |||| ||||| |||| || ||| Sbjct 2111644 ACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGC 2111696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355406868548664