Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq465 140 2e-28 seq10591 131 1e-25 seq1776 118 7e-22 seq23525 109 4e-19 seq782 109 4e-19 seq621 104 2e-17 seq69432 96.9 2e-15 seq10379 95.1 8e-15 seq2511 89.7 3e-13 seq4242 87.8 1e-12 seq21443 86.0 4e-12 seq9750 86.0 4e-12 seq13614 82.4 5e-11 >seq465 Length=2116526 Score = 140 bits (154), Expect = 2e-28 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||||||||| ||||| ||||| || || || || || Sbjct 2111466 AACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCCC 2111525 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | ||| | |||||| ||||| || ||| | || || || Sbjct 2111526 AGTGACACCATTGAGAATGTCAAAGC-CAAAATTCAAGACAAGGAGGGTATCCCACCTGA 2111584 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | ||||||||||||||||| |||||||| | |||||| | || || Sbjct 2111585 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 2111644 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 2111645 CAACATCCAGAAAGAGTCCAC 2111665 >seq10591 Length=527945 Score = 131 bits (144), Expect = 1e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || |||| |||||| ||||| ||||| || || || || || Sbjct 132324 AACATGCAGATCTTTGTAAAGACCCACACGGGCAAAACCATCACCCTTGAGGTCGAGCCC 132265 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | ||| |||||| ||||| || ||| | || || || Sbjct 132264 AGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGAC 132205 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | ||||||||||||||||| |||||||| | |||||| | || ||| Sbjct 132204 CAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTAC 132145 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || ||||||||||| Sbjct 132144 AACATCCACAAAGAGTCCAC 132125 >seq1776 Length=1009680 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 76079 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 76138 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 76139 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 76198 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 76199 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 76258 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 76259 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 76296 >seq23525 Length=221919 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| || || || || ||||| ||||| ||||| || Sbjct 220010 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 219951 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || || || ||||| | || || ||| Sbjct 219950 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 219891 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 219890 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 219831 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 219830 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 219793 >seq782 Length=6300357 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 3450424 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 3450483 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || |||| | | ||||| ||||| | || || || | Sbjct 3450484 TGACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCTCCTGACC 3450542 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || ||||| |||||||| | |||||| | || |||| Sbjct 3450543 AGCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACA 3450602 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 3450603 ACATCCAGAAAGAGTCCAC 3450621 >seq621 Length=1137327 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | || || || ||||||||||| || || ||||| || || || || ||| Sbjct 430109 ATGCAGCTCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 430050 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| ||| | || ||| |||||| ||||| || ||| | || || || || Sbjct 430049 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 429990 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | |||||||| ||||| || ||||| || | | |||| | || |||||| Sbjct 429989 CAGCGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCTCACTCTCTCAGACTACAAC 429930 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||| ||||||| Sbjct 429929 ATCCAAAAACAGTCCAC 429913 >seq69432 Length=13378 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||| ||| ||||| || | ||| || || ||||| ||||| ||||| || Sbjct 12561 AAAATGCAGATTT-CGTGAAAACTCTTATGGGGAAGACCATCACCCTCGAGGTTGAACCC 12503 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| | | |||| |||| || || || || ||||| | || || ||| Sbjct 12502 TCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 12443 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 12442 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 12383 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 12382 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 12345 >seq10379 Length=4916278 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || |||||||| || ||||| ||| | || || || || || Sbjct 1637435 AACATGCAGATCTTTGTGAAGACCCTCACAGGCAAAACCATCCCCCTTGAGGTCGAGCCC 1637494 Query 23668 ACGGACACTGTTGAAATATTA-AAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| | || | ||| ||| || |||| || ||| | || || || Sbjct 1637495 AGTGACACCATTGAGA-ATGACAAAGCCAAAGTTCAACACAAGGAGGGTATCCCACCTGA 1637553 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | |||||||| ||||| | |||||||| | |||||| | || || Sbjct 1637554 CCAGTAGCATCTGATATTTGCTGGCAATTAGCTGGAAGATGGCCGCACTCTCTCAGACTA 1637613 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 1637614 CAACATCCAGAAAGAGTCCAC 1637634 >seq2511 Length=2685710 Score = 89.7 bits (98), Expect = 3e-13 Identities = 144/202 (71%), Gaps = 9/202 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||| || || || ||||| || || | || ||| Sbjct 488529 ATGCAGATCTTTGTGAAGACCCTCATGGACAAGACCATCACCCTTGAGATCGAGCCCAGT 488470 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGG-TGTACCGCCAGATC 23728 |||||| || | ||| | ||| | |||| || ||||| ||||| | | || || | | Sbjct 488469 GACACTATTTAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAAGGGTATCCCACCTAACC 488411 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT---AGGCGATT 23785 | |||||| | ||| || | || ||||| ||||| || | |||||| | |||| | Sbjct 488410 AGCAGCGTCTGATACTTTCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGC---T 488354 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || ||||||||||| Sbjct 488353 ACAACATCCAGAAAGAGTCCAC 488332 >seq4242 Length=3828013 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTT-CGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 |||||||||||||| | | |||||||| || ||||| || ||||| ||||| | ||| | Sbjct 2528722 AAAATGCAGATTTTTCCTGAAAACCCTTACAGGAAAGACCATCACCCTCGAGGCTGAACC 2528663 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||| || || ||| |||| || || | || ||||| | || || | Sbjct 2528662 CTCGGATACGGTAGAAGATGGAAAAGCCAAGATCCGGGGTAAGGAAGGAATTCCTCCTAA 2528603 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || | | || |||| ||||| ||||||||||| | | | ||||| || || Sbjct 2528602 TCAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTA 2528543 Query 23787 CAACATACAAAAAGAGTC 23804 |||||| ||||| ||||| Sbjct 2528542 CAACATTCAAAAGGAGTC 2528525 >seq21443 Length=656158 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 30324 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 30265 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || ||||| || || ||||| | || || || Sbjct 30264 AGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGAC 30205 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | || ||| Sbjct 30204 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 30145 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 30144 AACATCCAGAAGGAGTCGAC 30125 >seq9750 Length=790633 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| || |||||||| | ||| || || ||||| || || ||||| || Sbjct 138378 AAAATGCAGATTTTTGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGGTTGAACCC 138437 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | | |||| |||| || || || || ||||| | || || ||| Sbjct 138438 TCAGATAAGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 138497 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||| | ||||||||||| | ||| ||||| || | | Sbjct 138498 CAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 138557 Query 23788 AACATACAAAAAGAG 23802 ||||| ||||| ||| Sbjct 138558 AACATTCAAAAGGAG 138572 >seq13614 Length=2327589 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||| |||||||||| | |||||||| | ||| || || |||||||| || ||||| || Sbjct 1470433 AAAACGCAGATTTTCATGAAAACCCTTATGGGGAAGACCATCACTCTTGAGGTTGAACCC 1470492 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || | | Sbjct 1470493 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGCT 1470552 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 | || | || ||||| ||||| ||||||||||| | | | | ||| || ||| Sbjct 1470553 TAGCAAAGAGGGATCTTTGCTGGCAAGCAACTGGAAGATGGATGGATTTTGTCTGACTAC 1470612 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || ||||| ||||| || Sbjct 1470613 AATATTCAAAAGGAGTCTAC 1470632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337576921516256