Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2874 145 6e-30 seq64438 107 2e-18 seq38050 102 7e-17 seq1020 100 2e-16 seq3440 89.7 4e-13 seq10198 82.4 6e-11 seq2198 82.4 6e-11 >seq2874 Length=3733233 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||| Sbjct 1920571 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1920512 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || || |||||||| |||||||| || ||||| | || | Sbjct 1920511 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1920452 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 1920451 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAGA 1920407 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 1916382 AAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGTGGAGAAC 1916323 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| ||| || ||||| |||||||| || || ||||| Sbjct 1916322 CCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 1916263 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||| | |||||||| || Sbjct 1916262 GACAGCTCTTTAGCATTTGTGGATCC 1916237 >seq64438 Length=1527 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 11/236 (5%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| ||| || || |||| |||||||| |||| | | ||| |||| Sbjct 897 TGGGAAAGG-TCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATGTGACTTAGGT 955 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | || | |||||||||| || || ||||| || || || | ||| | |||| ||| | Sbjct 956 AAACATACGCATCTCCCAAAGTATGTACAAAGTCACCGGGCTTTAGGTCCGTGATGTGCG 1015 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGG-GCACCCCGAGCCCCATG 29788 | |||| || ||||| || | ||||||||||||||| |||| |||||| | Sbjct 1016 CGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGTGCACCC---------AG 1066 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29844 |||||||||| |||| |||||||| || ||||| || | |||| | ||||| Sbjct 1067 GCCCCTGACCTTTGGTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAACTG 1122 >seq38050 Length=490 Score = 102 bits (112), Expect = 7e-17 Identities = 183/261 (70%), Gaps = 11/261 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || | | Sbjct 253 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 194 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTAC-CCATTATCACCACGT 114380 | ||||| |||||| || | ||||||||||||||||| ||| |||| ||||||| | Sbjct 193 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACTCCATAATCACCAGAT 134 Query 114381 TCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439 |||| |||||| | ||||| || | |||| | ||| | || | | | || || || Sbjct 133 TCTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT- 76 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 114498 || | ||| |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 75 -----CCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GA 22 Query 114499 CGCTGCCACGATACCGTTCAG 114519 | | || ||||| | ||| || Sbjct 21 CACAGCGACGATGCAGTTTAG 1 >seq1020 Length=1834505 Score = 100 bits (110), Expect = 2e-16 Identities = 179/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || || | Sbjct 1061606 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 1061547 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| |||| |||||||| ||||||| || Sbjct 1061546 GAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCCATAATCACCAGATT 1061487 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| | | |||| | ||| | || | | || || || Sbjct 1061486 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-ATTCTCTGGAAATACCTGAATTCATT-- 1061430 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 114500 || | |||| |||| ||||| || || || || || |||||||||| | | || Sbjct 1061429 ----CCTGAGCGGAGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTTTGGGACA 1061374 Query 114501 CTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 1061373 CAGCGACGATGCAGTTTAG 1061355 >seq3440 Length=2799305 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || | | Sbjct 964696 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 964637 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||||||||| ||| ||| ||||||| || Sbjct 964636 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 964577 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA 114413 ||| |||||| | ||||| || | ||||| Sbjct 964576 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 964545 >seq10198 Length=1797438 Score = 82.4 bits (90), Expect = 6e-11 Identities = 122/172 (71%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||| |||||||||||| || | || || |||| | | || ||||| | ||| ||| Sbjct 1676269 AAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTCTCAGTGGA-GAAT 1676327 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| || || ||| | || || || | || ||||| Sbjct 1676328 CCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCTCACTCCCTTGGAA 1676387 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30188 || || ||||| | | |||||| || ||| |||||||||| ||||||| Sbjct 1676388 GACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTCCTCCA 1676439 >seq2198 Length=3459117 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || |||||||| |||| || | || || | ||||| |||||| || || Sbjct 2053888 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCTTGTAAAGGTCGATTCTTCTCAGGA 2053947 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||||||||| ||||||| ||||||| ||||| |||||| Sbjct 2053948 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 2053995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405643279626352