Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq10346 275 5e-69 seq1811 176 4e-39 seq3648 109 5e-19 seq8028 104 2e-17 seq14019 95.1 1e-14 seq985 91.5 1e-13 seq17275 89.7 4e-13 seq21343 87.8 2e-12 >seq10346 Length=345594 Score = 275 bits (304), Expect = 5e-69 Identities = 601/882 (68%), Gaps = 30/882 (3%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || | ||||| ||| || ||||| || || || | | |||||||| ||| Sbjct 268987 TGATACTCCGTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCC 269041 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTT-TCACACTTTAGAGCTACAAGCAA 4378 ||||| ||||| || || | | || || || ||| || || | || ||| Sbjct 269042 ATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCC---AGTTCCA-GCAT 269097 Query 4379 -TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATC 4437 || ||| || ||||| || || || || |||| || ||| || || ||||| Sbjct 269098 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 269157 Query 4438 TCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATAT 4497 ||||||| | || | || | || || |||||||| || || | | ||||| | Sbjct 269158 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 269217 Query 4498 CTTTTATTTTAT-CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556 || ||| | | | || || |||||| | ||| | || | |||| | || |||||| Sbjct 269218 CTCTTACTCTCTACTCCAG-TGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAA 269276 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 ||||| || ||||| || ||||||||||| ||||| || ||||| || | || ||||| Sbjct 269277 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 269336 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 | |||| || || ||||| ||||| | ||||| | |||||||||| ||||||| Sbjct 269337 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCC 269393 Query 4677 ACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTT 4735 | || ||||| |||| | || || | | |||| ||||||| |||||| | Sbjct 269394 GCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTT-CTTTGTCCCCAATCCAGTG 269452 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA--ATAAT 4793 || ||||| | || || ||||| || || || || || | || || || | | || Sbjct 269453 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAA 269512 Query 4794 TTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 || | ||| | |||| |||| || |||||||| || || | |||||||||||||| Sbjct 269513 TTCCCTTTCTT---TGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGA 269569 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 |||||| || ||||| ||||| || || || | || || | |||||||| | ||||| Sbjct 269570 ATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAAC 269629 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 ||| | | ||||| || || |||||||| |||||||| || ||||| |||||||| || Sbjct 269630 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 269689 Query 4973 CGCCAAAACATGAGATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 ||| |||||| |||||||| | || | || | ||||| || || ||||| | || Sbjct 269690 AACCAGAACATGGGATATAAAAT-CTCTCTCCTTGGGCTTCAGGGATTCCCAGT--GCCA 269746 Query 5032 AA--TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 || || || | | || || || || | ||||| || || |||||||| || || || Sbjct 269747 AATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATA 269806 Query 5090 CATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||| ||| |||||| | |||| | || | |||||||| Sbjct 269807 CATCTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 269848 >seq1811 Length=1713758 Score = 176 bits (194), Expect = 4e-39 Identities = 383/567 (68%), Gaps = 15/567 (3%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || | | Sbjct 78117 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGT 78058 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | |||| || || ||||| ||||| ||||| || ||||||||| | Sbjct 78057 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 77998 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 ||| ||| || |||||||||| | | || || | | |||||| | Sbjct 77997 GTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 77938 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| | || |||| || || ||||| || || || ||||| | || || || Sbjct 77937 ATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCATTG 77879 Query 4788 AATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || | ||| |||| || || |||| ||| | ||||| || || || ||| Sbjct 77878 AAGAGAAATTCCCTTTCTT----TGTTATCTTTAATGT--GTGTCAATAAGGAGATTATT 77825 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 || ||||||||| | |||||||||||| | || || || || ||||| | |||||| Sbjct 77824 TATGTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTGT 77765 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | |||| ||| | | |||| ||| || |||||||| | |||||| || |||| || Sbjct 77764 AATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGC 77705 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||| || |||| || || |||||||| || ||| |||||||| || || ||| Sbjct 77704 TGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCA 77645 Query 5024 GTGGGGCAAA--TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 || | |||| || || | | || ||||| | | |||| || || | || || Sbjct 77644 GT--GCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACT 77587 Query 5082 TTTTTGTACATAGACCAAATATCAGGA 5108 || || ||| | |||||||||| || Sbjct 77586 TTCTTATACGTTTTCCAAATATCATGA 77560 >seq3648 Length=3343546 Score = 109 bits (120), Expect = 5e-19 Identities = 158/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || |||| || ||||| || | | ||||| ||||| || ||| || |||| Sbjct 2095216 AGCTCTTGTGAAAATGGACATTCAGATAGCGCTGCCTTCTGGGTGTTATGGAAGAGTAGC 2095157 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | || || ||||| | ||||||||||| || || || || ||||| |||| | Sbjct 2095156 TCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGGTGA 2095097 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| ||||||| ||||| |||||| | | || Sbjct 2095096 AGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAACTTTGGCAAAGAAAAGT-TTGAAG 2095038 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | |||||||| ||| | || || || |||||| || Sbjct 2095037 --TCAAAAAGGGTGATTGAACTGCACAGCTCATTTGCAAA 2095000 >seq8028 Length=862626 Score = 104 bits (114), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832 ||||| || ||||| || || | ||||| ||||| || ||| || ||| ||| | | Sbjct 358717 AAAACAGACATTCAGATAGCTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTCCATGGT 358658 Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892 |||| ||||| | ||||||||||| || || || || ||||| ||||| | | |||| Sbjct 358657 CTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGACGAAAATTATA 358598 Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||||| ||||| |||| ||||||||||||| Sbjct 358597 GAGGAAATGTTGGTGTTGTACTGTTTAATTTTGG 358564 >seq14019 Length=3103224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830 ||| |||| || ||||| || || | ||||| |||| || || || ||||||| | Sbjct 398325 AGTGAAAATGGACATTCAGATAGCTCTTCCTTCTGGGTTTTATAGAAGAGTAGCTCCATG 398266 Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 ||||| ||||| | |||||||||||||| || || | ||||| ||||| ||| || Sbjct 398265 GTCTGGCTTGGCTGCAAAACACTTTATCGATGTAGGAACTGGTGTCATAGACAAAGATTA 398206 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAA 31947 ||||||| ||||| || ||||||||||||| |||||| | || ||| || Sbjct 398205 CTGAGGAAATGTTGGTGGTGAACTGTTTAATTTTGGCAAAGAAAAGT-TTAAAGTCAGAA 398147 Query 31948 AAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGT 32007 ||| | ||| | | || || || ||||| ||| ||| | || ||||||||| Sbjct 398146 AAA--GTGATCGCATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAATAGAAGA 398089 Query 32008 AG 32009 || Sbjct 398088 AG 398087 >seq985 Length=6397689 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 2225023 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 2224964 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 2224963 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 2224906 >seq17275 Length=3305369 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 1136042 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 1135986 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 1135985 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 1135926 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 1135925 ATAAGTCGAC 1135916 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 1154323 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 1154264 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 1154263 ATAAAATCAAAAGGATT 1154247 >seq21343 Length=72086 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 ||||| | ||||| || || | ||||| || || || ||| || | |||| | ||| Sbjct 243 AAAACGAACATTCAGATAGCTCTTCCTTCTGGATGTTAGGGAGGAGTGGCTCT--GGTCT 186 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || ||||| | ||||||||||| || | || || ||||| |||||| ||| |||| | Sbjct 185 GGCTTGGCTGCAAAACACTTTATAGATATAGGAGCTGGTGTCATAGATGAAGATTATACA 126 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||| ||||| ||| || |||||||||| Sbjct 125 GGAAATGTTGGCGCTGTCCTGCTTAATTTTGG 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426502943415656