Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2874 125 5e-24 seq64438 96.9 3e-15 seq10198 84.2 2e-11 >seq2874 Length=3733233 Score = 125 bits (138), Expect = 5e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 1920571 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1920512 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||| |||||||| ||||| || || ||||| | | Sbjct 1920511 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1920452 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 1920451 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 1920408 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| ||||| || ||||||||||| ||||| || || || || |||| ||| Sbjct 1916404 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 1916345 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 1916344 CCCTTCTTCTCTGGTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 1916285 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || |||||||| | |||||||| || Sbjct 1916284 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 1916237 >seq64438 Length=1527 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/219 (70%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| ||| || || |||| |||||| | ||||| | | |||| |||| Sbjct 897 TGGGAAAGG-TCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATGTGACTTAGGT 955 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | || | || ||||||| || || ||||| || || || | ||| | |||| ||| | Sbjct 956 AAACATACGCATCTCCCAAAGTATGTACAAAGTCACCGGGCTTTAGGTCCGTGATGTGCG 1015 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||| || ||||| || | ||||||||||||||| ||| | || || | Sbjct 1016 CGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAG--------GTGCACCCAGG 1067 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCAT 27322 |||| ||||| |||| ||||| || || ||||| |||| Sbjct 1068 CCCCTGACCTTTGGTGCAGCTGGCAGGACAGCTCACCAT 1106 >seq10198 Length=1797438 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 ||| ||||| || |||| |||||| ||||| || | || || |||| | | || ||||| Sbjct 1676257 GTATTCTGC-CCAAAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTC 1676315 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 | ||| ||| ||| ||||||||||||||| || || ||| | || || || | Sbjct 1676316 TCAGTGGA-GAATCCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCT 1676374 Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 27677 || ||||| || || ||||| | | |||||| || ||| |||||||||| || Sbjct 1676375 CACTCCCTTGGAAGACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTC 1676434 Query 27678 CTCCA 27682 ||||| Sbjct 1676435 CTCCA 1676439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369034202147192