Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq42597 343 3e-90 >seq42597 Length=1571 Score = 343 bits (380), Expect = 3e-90 Identities = 544/766 (71%), Gaps = 24/766 (3%) Strand=Plus/Minus Query 1561 CGGCGGATGCAATGTCCCAGTTGTTCGTTTGCCTATCCGGAAAGGCTTCGGCCCAATGGA 1620 |||||||||| ||| ||| | || || ||| |||| ||||||||||||||||||| Sbjct 1571 CGGCGGATGCGATGGGACAGATATTTGTCTGCACATCCAAAAAGGCTTCGGCCCAATGGG 1512 Query 1621 TACTGGAGGCGGACATACAAGGGTGTTTTGACCACATCAATCATGACTGGCTACTGAACC 1680 | |||||||||| || || || |||||||||||||| || || | ||||| | ||| Sbjct 1511 TGTTGGAGGCGGATATTCAGGGCTGTTTTGACCACATTAACCACCAATGGCTGGTTGACC 1452 Query 1681 ATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAGGCCGGCGTGATCCACAAAG 1740 | || |||| | ||||||| |||| || || ||||| || ||||| ||| ||||||| | Sbjct 1451 ACGTTCCCATGAACAAGGTCGTCCTGCGTAAGTGGTTAAAAGCCGGGGTGGTCCACAAGG 1392 Query 1741 GCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAATCATCTCGCCTACTTTGG 1800 ||| || | |||| || | || || || |||||||||||||||||||| || |||| Sbjct 1391 GCCGCCTTTCGCCAACCGAAGAAGGGACGCCGCAAGGCGGAATCATCTCGCCCACGTTGG 1332 Query 1801 CAAACATGGTGCTCG-ATGGCCTGGAATCACAGCT-CAAGCGACACCTGGGCGTG----A 1854 | || | ||| | | | || ||||| ||| | || ||||| |||| || | | | Sbjct 1331 CGAATGT-GTGTTTGAACGGACTGGAGTCAGACCTGAAAGCG-TACCTCGGTGCGCAATA 1274 Query 1855 C--AAGGGCGAA------GAAGCTGAAACTCAATGTGGTGCGCTATGCGGACGACTTCGT 1906 | || | |||| |||||||||| |||||||||| || || || ||||| || || Sbjct 1273 CGGAAAGACGAAAGCCACGAAGCTGAAAGTCAATGTGGTCCGGTACGCCGACGATTTTGT 1214 Query 1907 CATCACCGGTGTCTCTCCCGAGGTACTGGAGAAAGAAGTCAAACCCTGGGTAGAGCAGTT 1966 ||||| || || || | |||||| ||| ||| || |||||||| || Sbjct 1213 GATCACTGGCAATTCGAAGGAATTGTTGGAGACGGAAATCAGGCCGTGGGTAGAAGCCTT 1154 Query 1967 CCTGGCGGTACGCGGGCTGCAGCTCTCTCTGGAGAAAACGCGGATCGCCCACATAGATCA 2026 ||| || ||| || |||| || || | ||| || ||| ||| |||| || | Sbjct 1153 CCTTGCACAACGGGGACTGCGACTATCGCCGGAAAAGACGAAAGTCGTACACACGGACGA 1094 Query 2027 GGGCTTCGACTTCCTCGGTTGGAACTTCCGCAAGTACAACGGGAAGCTTCTGATCAAACC 2086 ||||| ||||| || || |||||||| |||||||||||||| ||| | || ||||| || Sbjct 1093 AGGCTTTGACTTTCTGGGATGGAACTTTCGCAAGTACAACGGAAAGTTGCTCATCAAGCC 1034 Query 2087 CAGCCAGAAGAACGCGAAAGCGTTCTACGGCAAGGTGAAGGAGGTCATCGAAACCAGCAG 2146 ||| ||||||||| | || ||||||| ||||||| | ||| |||| |||| || ||| Sbjct 1033 AAGCAAGAAGAACGTGCAAACGTTCTATCGCAAGGTCAGAGAGATCAT-GAAAACA-CAG 976 Query 2147 --GACGGCAAGGCAAGAGGACTTGATCCGAACGCTGAATCCGATTCTGCGCGGCTGGGCG 2204 |||| | ||| |||| | || | ||| ||||| || | || ||||||||| Sbjct 975 TTAACGGTGAAGCAGGAGGTTCTCATTGCCAAGCTCAATCCCGTTTTACGGGGCTGGGCG 916 Query 2205 CTGTATCACCAGCCAGTGGTTGCCAAGCAAACGTTCAGCCGCATGGACAA-CAGAGTGTT 2263 | ||| ||||| || ||||| || || |||| ||||| || ||||| || | || | Sbjct 915 CAGTACCACCAACCGGTGGTGGCGAAAGAAACCTTCAGTCGGATGGATAATCTGA--TCT 858 Query 2264 TCTCAAG-CTCTGGCGTTGGGCGAAACGGCGGCACCCGAACAAGTC 2308 || | ||| ||| ||||||| ||| || || ||||| ||||| Sbjct 857 ACTGGCGCCTCGTGCGCTGGGCGAGACGACGACATCCGAATAAGTC 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104186690349616