Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10346 367 2e-96 seq1811 221 2e-52 seq3648 111 2e-19 seq985 111 2e-19 seq71915 105 9e-18 seq8820 105 9e-18 seq17275 84.2 3e-11 >seq10346 Length=345594 Score = 367 bits (406), Expect = 2e-96 Identities = 648/939 (69%), Gaps = 18/939 (2%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| || | |||| ||| ||| | || |||| ||||| Sbjct 268921 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAA-ATTCTCTGTTGGACTTGACACCACTCC 268979 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || | ||||| || || || || ||| || ||| || Sbjct 268980 CATCCTCTGATACTCCGTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAAT 269034 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| |||||||| |||||||| || || | | ||| || | || || | ||| Sbjct 269035 ATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAG 269094 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || |||| ||||| || || || || ||| ||||| | |||||||| || || Sbjct 269095 CAT--GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 269152 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 | | || || || | ||||| || || || || ||||| || ||||||| | || Sbjct 269153 AGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAAT 269212 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 ||| | |||| | | ||| |||| | | || ||||| ||||| | || || Sbjct 269213 TATTTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGC 269272 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||||||||| || | ||| |||||||| ||||| | ||| || ||||||||||| || || Sbjct 269273 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 269332 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| ||||| ||||| |||||||| ||||| | || ||| | |||||||||| |||| Sbjct 269333 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCC 269389 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322 ||| | || ||||| | || | || || || | ||||| |||| ||||| Sbjct 269390 TTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCA 269449 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 | |||||||| ||||||||||| ||||||||||| ||||| || ||||| | ||| Sbjct 269450 GTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAG 269509 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 ||| | |||| ||| |||||| | |||||| || || | | |||||||||||| || Sbjct 269510 AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGA 269569 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || || || || || || || || || || | ||||| | |||||||| ||||| || Sbjct 269570 ATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAAC 269629 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | |||||| || |||| || ||||||||||| |||||||| || ||||| || Sbjct 269630 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 269689 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 | | ||||| ||||||| | | || |||| |||| | ||||| || Sbjct 269690 AACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGTGCCAAAT 269749 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || || || | || || || || || ||||| || || || || || || |||||||| Sbjct 269750 GTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACAT 269809 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||| |||||| ||| | | | ||||| || ||||| Sbjct 269810 CTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 269848 >seq1811 Length=1713758 Score = 221 bits (244), Expect = 2e-52 Identities = 389/561 (69%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| | ||| || | ||| ||||| || ||||| | ||| || ||||||||||| Sbjct 78117 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGT 78058 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| ||||| ||||| |||||||| ||||| || ||||| ||||||||| | Sbjct 78057 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 77998 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTAACTGGCTTCGTTGTG 48316 ||| ||| || ||||| || | || | ||||| ||||| | ||| ||| Sbjct 77997 GTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAAC-GTCTTTGTTCCC 77939 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| ||||| | ||||||||||| |||| |||||||||||| || ||||| Sbjct 77938 AATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATT 77880 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 |||||||| | |||| ||| ||||||||| || || || || | ||| ||| || Sbjct 77879 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGATTATTTAT 77822 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || || || | ||||| || || | || || || || || || | |||||| || Sbjct 77821 GTCAGAATGTGTGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 77762 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 ||| | || | |||| |||| |||| || |||| |||||| ||||||| || || Sbjct 77761 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 77702 Query 48557 AAAAAATGC--TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||| || || |||| | | | ||||||||| |||| | | |||| | |||| Sbjct 77701 AAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAG 77644 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | || || || || | || ||||| | || |||| || || ||||| |||| Sbjct 77643 TGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 77584 Query 48675 TTATACATATTCCATATATCA 48695 |||||| | ||||| |||||| Sbjct 77583 TTATACGTTTTCCAAATATCA 77563 >seq3648 Length=3343546 Score = 111 bits (122), Expect = 2e-19 Identities = 247/362 (68%), Gaps = 19/362 (5%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | ||||| ||| |||| | || ||| ||||| Sbjct 2094918 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTCGGTATCATCCAAAGCTTGAACTTCT 2094975 Query 45934 TTCAGATCAGGATAATATA-TACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 | | || |||||| | | | |||| | || || || || ||| ||||||| | || Sbjct 2094976 TCTATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTT 2095035 Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052 | |||||| | ||||| ||| || | ||| | || |||| | ||||||||||| Sbjct 2095036 GACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATC 2095095 Query 46053 TTCATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAGG 46109 |||| |||| || || |||| ||||| ||| |||| || || || || | || Sbjct 2095096 TTCACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGG 2095155 Query 46110 AGCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 46165 ||||| |||||||||| ||||| |||| | ||| |||| || |||| | || Sbjct 2095156 AGCTACTCTTCCATAACACCCAGAA----GGCAGCGCTATCTGAATGTCCATTTTCA-CA 2095210 Query 46166 ATCTCCTTTCTCCA-GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224 | ||||||||| | || || || || || || |||||||| | || || || || Sbjct 2095211 A-GAGCTTTCTCCATAGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCG 2095269 Query 46225 GC 46226 || Sbjct 2095270 GC 2095271 >seq985 Length=6397689 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 2227121 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 2227062 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| || |||||||| |||||||| || || ||||| || Sbjct 2227061 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 2227003 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||| | |||||| || || | ||||||||||||||| || || || | Sbjct 2225031 TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 2224972 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 2224971 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 2224917 >seq71915 Length=1063 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| ||||| Sbjct 458 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 517 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| |||| || ||||| || || || || || | ||| | ||||||| Sbjct 518 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 577 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 578 ATATGTTGTGGTCTTTCAGCC 598 >seq8820 Length=2893063 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 2569784 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 2569725 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 2569724 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 2569665 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 2569664 TTTCTTATACCAT 2569652 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| ||||||||||| ||||| ||||||| || ||||||| || | || Sbjct 2559107 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 2559048 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || || || | || || ||||||| || Sbjct 2559047 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 2558988 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | ||||||| || Sbjct 2558987 TCCAGGTAAATAGCAAATGCTCCAGGACG 2558959 >seq17275 Length=3305369 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || || |||| ||| | ||||||||| ||||| |||||| Sbjct 1129716 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 1129657 Query 48698 GTATTGGATTGGGAAAATAACAAA 48721 |||||||||||| || || ||||| Sbjct 1129656 GTATTGGATTGGAAAGATGACAAA 1129633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693756769332480