Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20bieti_20[refseq_20GCF_5F001698545.1_202016-08-03] 105,032 sequences; 2,977,074,946 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23525 163 7e-35 seq1776 154 4e-32 seq782 152 1e-31 seq10591 147 5e-30 seq69432 145 2e-29 seq21443 132 1e-25 seq11136 127 5e-24 seq16750 114 3e-20 seq1867 111 4e-19 seq18922 107 5e-18 seq6252 104 6e-17 seq4242 104 6e-17 seq53020 102 2e-16 seq14565 98.7 2e-15 >seq23525 Length=221919 Score = 163 bits (180), Expect = 7e-35 Identities = 171/224 (76%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| || ||||| || || |||||||||||||| ||| Sbjct 220010 AAAATGC---AGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAA 219954 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||| || || || || || || ||||| ||||| || |||||||| ||||| Sbjct 219953 CCCTCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCT 219894 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || |||||| |||| ||||| || || || || || ||||||||| | ||| | | || Sbjct 219893 GATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGAC 219834 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || | ||||| || || || || |||||||| |||||||| Sbjct 219833 TACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 219790 >seq1776 Length=1009680 Score = 154 bits (170), Expect = 4e-32 Identities = 169/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| || || || || || |||||||||||||| ||| Sbjct 76079 AAAATGC---AGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAA 76135 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || || || || || || || ||||| ||||| || |||||||| ||||| Sbjct 76136 CCCTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCT 76195 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || |||||| |||| ||||| || || || || || ||||||||| | ||| | | || Sbjct 76196 GATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGAC 76255 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || | ||||| || || || || |||||||| |||||||| Sbjct 76256 TACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 76299 >seq782 Length=6300357 Score = 152 bits (168), Expect = 1e-31 Identities = 160/207 (77%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || |||||||||||||| | ||| || | Sbjct 3450428 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGTG 3450485 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| |||||| |||||||| ||||| |||||||| ||||||| Sbjct 3450486 ACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGC 3450545 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| ||||||||| | || || | || || ||| Sbjct 3450546 AGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACA 3450605 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 3450606 TCCAGAAAGAGTCCACTCTGCA-CTTG 3450631 >seq10591 Length=527945 Score = 147 bits (162), Expect = 5e-30 Identities = 161/212 (76%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || | ||| || ||||| |||||||| ||||| || || ||| Sbjct 132318 CAGATCTTTGTAAAGACCCACACGGGCAAAACCATCACCCTTGAGGTCGA--GCCCAGTG 132261 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||||||| || ||||| ||||| || || ||||| || ||||||| Sbjct 132260 ACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAGC 132201 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || ||||| |||||||| |||||||| | ||||| | || || ||| Sbjct 132200 AGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAACA 132141 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| ||||| || || ||||| || || ||| Sbjct 132140 TCCACAAAGAGTCCACCCTGCACCTGGTGTTG 132109 >seq69432 Length=13378 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||||||||| | || || || |||||||||||||| ||| ||| || | || Sbjct 12551 TTTCGTGAAAACTCTTATGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATATGAT 12492 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || || || ||||| ||||| || |||||||| ||||| || |||||| |||| Sbjct 12491 AGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACT 12432 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || || || ||||||||| | ||| | | || || || | ||||| Sbjct 12431 GATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAA 12372 Query 178109 AGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || |||||||| |||||||| Sbjct 12371 GGAGTCTACTCTTCATCTTGTGTTGAGACT 12342 >seq21443 Length=656158 Score = 132 bits (146), Expect = 1e-25 Identities = 172/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || |||||||| |||| Sbjct 30329 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 30273 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||| || || || || || ||||| || ||||| || Sbjct 30272 TGGA--GCCCAGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCAT 30215 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 30214 TCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 30155 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | | || || ||| |||| || || || || ||||| || || || | || ||| Sbjct 30154 TTCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGA 30100 >seq11136 Length=3384853 Score = 127 bits (140), Expect = 5e-24 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||| ||| || ||||| || || ||||||||||||| ||| Sbjct 1795775 AAAATGC---AGATTTTCGTGATAACCCTTACAGGGAAGACCATCACCCTCGAGGATGAA 1795719 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT---CCCT 178031 ||||||||| || || || || | ||||| |||| || |||||||| ||| Sbjct 1795718 CCCTCAGACACAATAGAAAATGTATAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCT 1795659 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || ||||| |||| ||||| || || || || || ||||||||| | ||| | | Sbjct 1795658 CCTAGTCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCT 1795599 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || | |||||||| || || || ||| |||| |||||||| Sbjct 1795598 GACTACAATATTCAAAAAGAGTCTACTCTTCATTTTGTGTTGAGACT 1795552 >seq16750 Length=4688092 Score = 114 bits (126), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 11/215 (5%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || ||||| || || |||||||| ||||| ||| || | Sbjct 387382 CAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTTGAACCCTTGAAT 387441 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || || || ||||| || |||||||| ||||| || |||||| Sbjct 387442 ACAACAGAAAATGTAAAGGCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 387501 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || | ||||||| ||| || || ||| | Sbjct 387502 AGACTGATCTTTGCTGGCAAGCAATTGGAAGATG-------TCT----GACTACAACATT 387550 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 387551 CAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 387585 >seq1867 Length=10309187 Score = 111 bits (122), Expect = 4e-19 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCA 177987 |||||||| || || || | || || |||||||| || ||||| || ||| |||||| Sbjct 6956372 TTCGTGAAGACCCTGACTGACAAGACCATCACCCTTGATGTGGA--GCCCAGTGACACCA 6956429 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 |||| || || || || |||||||| || ||||| ||| || ||||||| | | Sbjct 6956430 TCGAAAATGTGAAGGCCAATATTCAGGATAAGGAAGGCATCTTCCCCAACCAGCAGAGGC 6956489 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107 | ||||| || || | ||||| |||||||| |||||| | || || ||| |||| | Sbjct 6956490 TCATCTTTGCAGGCATGCAGCTGGAAGATGGCCACACTCTTTCTGACTACAACATCCAGA 6956549 Query 178108 AAGAATCAACACTGCATCTTGT 178129 ||||||| || ||||| || || Sbjct 6956550 AAGAATCGACCCTGCACCTGGT 6956571 >seq18922 Length=4408181 Score = 107 bits (118), Expect = 5e-18 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| | ||| | || || || || || ||||||||||||| ||| | || Sbjct 377033 CAGATTTTCATAAAATC-CTTACGGGGAAGACTGTCACCCTCGAGGTCGAACCCATGGAT 376975 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || ||||||| ||||| || |||| Sbjct 376974 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATGAGCAG 376915 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 376914 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTGT--CTGACTACAACATT 376857 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || || |||||||| |||||||| Sbjct 376856 CAAAAGGAGCCCACTCTTCATCTTGTGTTGAGACT 376822 Score = 107 bits (118), Expect = 5e-18 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| | ||| | || || || || || ||||||||||||| ||| | || Sbjct 380037 CAGATTTTCATAAAATC-CTTACGGGGAAGACTGTCACCCTCGAGGTCGAACCCATGGAT 379979 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || ||||||| ||||| || |||| Sbjct 379978 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATGAGCAG 379919 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 379918 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTGT--CTGACTACAACATT 379861 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || || |||||||| |||||||| Sbjct 379860 CAAAAGGAGCCCACTCTTCATCTTGTGTTGAGACT 379826 >seq6252 Length=4458365 Score = 104 bits (114), Expect = 6e-17 Identities = 160/223 (72%), Gaps = 9/223 (4%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| | || || | || || || |||| |||| Sbjct 652777 AGGTCAAAATGC---AGATCTTCGTGAAGAGCCTTACCTGCAAGACCATTGCCCTTGAGG 652833 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||| || || || ||||| ||||| || ||||| || Sbjct 652834 TGGA--GCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 652891 Query 178028 CCCTCCGGACCAGCA-ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 | || || ||||| ||| |||| ||| || | || ||| | ||||||| | |||| Sbjct 652892 TCTCCCCGAGCAGCAGACG-CTTAACTTTGCAGTCAAGCAGGTGAAAGATGGCCGCACTC 652950 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | || ||| || |||| ||||| || || ||||| ||||| Sbjct 652951 TTTCTGACTATGACATCCAGAAAGAGTCGACCCTGCACCTTGT 652993 >seq4242 Length=3828013 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCA 177987 ||||| ||||||| || |||||||| || ||||||||||||| ||| ||| || || Sbjct 2528711 TTTTCCTGAAAACCCTTACAGGAAAGACCATCACCCTCGAGGCTGAACCCTCGGATACGG 2528652 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 | || | | ||| ||||| | || || |||||||| ||||| | |||||| ||| Sbjct 2528651 TAGAAGATGGAAAAGCCAAGATCCGGGGTAAGGAAGGAATTCCTCCTAATCAGCAAAGAC 2528592 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107 | ||||| | || || || || ||||||||| | ||| | | || || ||| | |||| Sbjct 2528591 TGATCTTTGTTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAA 2528532 Query 178108 AAGAATC 178114 | || || Sbjct 2528531 AGGAGTC 2528525 >seq53020 Length=1597 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || || || ||||| || || |||||||| ||||| || |||||| Sbjct 1590 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCCCCCGACCAG 1531 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || || ||||| |||||||| | |||||| | || || ||| Sbjct 1530 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 1471 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 1470 ATCCAGAAGGAGTCGACCCTGCACCTGGT 1442 >seq14565 Length=1636251 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 9/205 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || |||||||| | | |||||||||||||| | ||| || | Sbjct 1463414 CAGATCTTTGTGAAGACCCTCACAGGTAGGATCATCACCCTCGAGGTCG--AGCCCAGTG 1463471 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||| ||||||||||| || ||||| ||||| || || ||||| | ||||||| Sbjct 1463472 ACACCACTGAGAACGTCAAGGCCAAAATTCAAGACAAGGAGGGCATCCCACTTGACCAGC 1463531 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || || || ||||||| || | | |||||| | || | ||| Sbjct 1463532 AGCGTCTGATATTTGCGGGCAAACAGCCGGA-----GCCGCACTCTTTCAGACTGCAACA 1463586 Query 178102 TCCAAAAAGAATCAACACTGCATCT 178126 |||| ||||| || | ||||| || Sbjct 1463587 TCCAGAAAGAGTCCAACCTGCACCT 1463611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202111311840208