Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq30435 93.3 9e-14 seq41116 91.5 3e-13 seq32805 91.5 3e-13 seq1240 89.7 1e-12 seq64362 87.8 4e-12 >seq30435 Length=681187 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 165703 AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 165762 |||| |||||| ||||||||||||||||||| ||||| ||||||| ||||||||| Sbjct 173848 AACGGCTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGG 173789 Query 165763 TTCGAGCCCCACGATGGGC 165781 ||||||||||||| ||||| Sbjct 173788 TTCGAGCCCCACGTTGGGC 173770 >seq41116 Length=308437 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 243767 TGCCCGGCTAGCTCAGTCGGTAGAGCATAAGACTCTTAATCTTAGGGTCGTGGGTTCGAG 243826 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 243827 CCCCACGTTGGGC 243839 >seq32805 Length=1485330 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1038127 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1038186 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1038187 CCCCACGTTGGGC 1038199 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1017279 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1017220 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1017219 CCCACGTTGGGC 1017208 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| ||| Sbjct 995251 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCAAGC 995192 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 995191 CCCACGTTGGGC 995180 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| ||| Sbjct 1030927 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCAAGC 1030868 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1030867 CCCACGTTGGGC 1030856 >seq1240 Length=2987750 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 161273 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 161214 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 161213 CCCACGTTGGGC 161202 >seq64362 Length=230 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 56 TGCCCGGCTAGCTCAGTCGGTAGAGCATAAGACTCTTAATCTTAGGGTCGTGGGTTCGAA 115 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 116 CCCCACGTTGGGC 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1055987355724560