Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9420 235 6e-57 seq30183 125 7e-24 seq37045 102 8e-17 >seq9420 Length=356144 Score = 235 bits (260), Expect = 6e-57 Identities = 587/883 (66%), Gaps = 20/883 (2%) Strand=Plus/Plus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| || || || || || || | || || || ||||| || || | Sbjct 52594 ACCACTCCCATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC----- 52648 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACC 16778 || || ||||||||||| || ||||| || || || ||||||| || | | | Sbjct 52649 AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCA--AAC 52706 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||||||| || ||| || || ||||| || || ||||| ||||| ||| | Sbjct 52707 CCAGTTCCAGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 52764 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || ||| | || || | || || || | ||| || ||||| ||| | Sbjct 52765 TCATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAG 52824 Query 16899 CTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958 | | |||| || |||| | ||| ||| | ||| || ||||| |||| Sbjct 52825 CATTGATAATTATTTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACA 52884 Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||||||| Sbjct 52885 TCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATG 52944 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||||||||||| | ||| ||||||| || || | ||||||| Sbjct 52945 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAA 53004 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 || || || || | | ||||| | | | ||||| | || || || ||||||| Sbjct 53005 AG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGT 53061 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | |||||| | | |||| || || || | ||| | ||| ||||||||| ||| Sbjct 53062 CCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGG 53121 Query 17199 CCTTAA--ATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGC 17255 | || | | || ||| |||| || | || || |||| || || || || || | | Sbjct 53122 CATTGAGGAGAAATTCCCTTT---CTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAAC 53178 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 | |||||||| || ||||||||||| ||||| || || || || | || || ||||||| Sbjct 53179 TATACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTT 53238 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | | || |||||||| | ||||| ||| | | ||||| || || ||||| || | Sbjct 53239 CTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 53298 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGC 17435 | || || || || ||| | ||| || |||| | | || | || | || Sbjct 53299 TTGCTGCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATT 53358 Query 17436 GCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTG 17495 ||||| | | || ||||| | ||||| || |||| |||||| || ||| | | Sbjct 53359 CCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCG 53418 Query 17496 CCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||| |||||||| | ||| ||||||| ||| | ||||||| Sbjct 53419 CCTTCTTATACATCTGCCAGATATCATGGTACTCGGTGGGGAA 53461 >seq30183 Length=85853 Score = 125 bits (138), Expect = 7e-24 Identities = 361/551 (66%), Gaps = 11/551 (2%) Strand=Plus/Plus Query 16976 CAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTT 17035 || ||||| ||||| || ||||| |||||||| || |||||||| | || |||||| | Sbjct 31455 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 31514 Query 17036 CCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACG 17095 ||||||||||| | ||| |||||| || || || ||||||||| | | | || || Sbjct 31515 CCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAGGTGCTTTCCACT 31574 Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGC 17155 |||||||| | | ||| | | || |||||||||| | |||||| | | Sbjct 31575 AGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCAATCCAATACAAG 31634 Query 17156 ACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCT 17213 ||||| | || || | ||| | | | ||| ||||| ||||| || | | || ||| Sbjct 31635 ACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTCC 31693 Query 17214 CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTA 17273 |||| | | | | || || || || || || || | | || || || ||| Sbjct 31694 CTTTCT----TTGTTATCTTTAATGTGTGTCAATAAGGAGATTATTTATGTCAGAATGTG 31749 Query 17274 TGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCA 17333 |||| || | || | || || || || ||||| || ||| | || |||| ||| Sbjct 31750 TGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTT 31809 Query 17334 CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC- 17392 ||| ||||| | | ||||| | || || || || | || || || || ||| Sbjct 31810 GAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCA 31869 Query 17393 -AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATC 17451 |||||| | | || |||||| |||| || || | || | ||||| | | || Sbjct 31870 GAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTC 31927 Query 17452 TTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATT 17511 ||||| | |||||||| | || |||| ||| | || || | || |||||| | || Sbjct 31928 CTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTATACGTTTT 31987 Query 17512 CCAAATATCAT 17522 ||||||||||| Sbjct 31988 CCAAATATCAT 31998 >seq37045 Length=3135053 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || |||||||| | || |||||| ||||||||||| Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341 Query 17106 C 17106 | Sbjct 1579342 C 1579342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516668929508160