Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 235 6e-57
seq30183 125 7e-24
seq37045 102 8e-17
>seq9420
Length=356144
Score = 235 bits (260), Expect = 6e-57
Identities = 587/883 (66%), Gaps = 20/883 (2%)
Strand=Plus/Plus
Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720
|| || ||||| || || || || || || | || || || ||||| || || |
Sbjct 52594 ACCACTCCCATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC----- 52648
Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACC 16778
|| || ||||||||||| || ||||| || || || ||||||| || | | |
Sbjct 52649 AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCA--AAC 52706
Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838
||||||| || ||| || || ||||| || || ||||| ||||| ||| |
Sbjct 52707 CCAGTTCCAGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 52764
Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898
|||| || ||| | || || | || || || | ||| || ||||| ||| |
Sbjct 52765 TCATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAG 52824
Query 16899 CTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958
| | |||| || |||| | ||| ||| | ||| || ||||| ||||
Sbjct 52825 CATTGATAATTATTTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACA 52884
Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018
|||| || || ||||| || ||||| ||||| |||||||| |||||||| || |||||||
Sbjct 52885 TCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATG 52944
Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078
| | || |||||| |||||||||||| | ||| ||||||| || || | |||||||
Sbjct 52945 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAA 53004
Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138
|| || || || | | ||||| | | | ||||| | || || || |||||||
Sbjct 53005 AG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGT 53061
Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198
| |||||| | | |||| || || || | ||| | ||| ||||||||| |||
Sbjct 53062 CCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGG 53121
Query 17199 CCTTAA--ATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGC 17255
| || | | || ||| |||| || | || || |||| || || || || || | |
Sbjct 53122 CATTGAGGAGAAATTCCCTTT---CTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAAC 53178
Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315
| |||||||| || ||||||||||| ||||| || || || || | || || |||||||
Sbjct 53179 TATACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTT 53238
Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375
| | || |||||||| | ||||| ||| | | ||||| || || ||||| || |
Sbjct 53239 CTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 53298
Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGC 17435
| || || || || ||| | ||| || |||| | | || | || | ||
Sbjct 53299 TTGCTGCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATT 53358
Query 17436 GCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTG 17495
||||| | | || ||||| | ||||| || |||| |||||| || ||| | |
Sbjct 53359 CCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCG 53418
Query 17496 CCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
|||| |||||||| | ||| ||||||| ||| | |||||||
Sbjct 53419 CCTTCTTATACATCTGCCAGATATCATGGTACTCGGTGGGGAA 53461
>seq30183
Length=85853
Score = 125 bits (138), Expect = 7e-24
Identities = 361/551 (66%), Gaps = 11/551 (2%)
Strand=Plus/Plus
Query 16976 CAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTT 17035
|| ||||| ||||| || ||||| |||||||| || |||||||| | || |||||| |
Sbjct 31455 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 31514
Query 17036 CCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACG 17095
||||||||||| | ||| |||||| || || || ||||||||| | | | || ||
Sbjct 31515 CCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAGGTGCTTTCCACT 31574
Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGC 17155
|||||||| | | ||| | | || |||||||||| | |||||| | |
Sbjct 31575 AGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCAATCCAATACAAG 31634
Query 17156 ACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCT 17213
||||| | || || | ||| | | | ||| ||||| ||||| || | | || |||
Sbjct 31635 ACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTCC 31693
Query 17214 CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTA 17273
|||| | | | | || || || || || || || | | || || || |||
Sbjct 31694 CTTTCT----TTGTTATCTTTAATGTGTGTCAATAAGGAGATTATTTATGTCAGAATGTG 31749
Query 17274 TGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCA 17333
|||| || | || | || || || || ||||| || ||| | || |||| |||
Sbjct 31750 TGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTT 31809
Query 17334 CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC- 17392
||| ||||| | | ||||| | || || || || | || || || || |||
Sbjct 31810 GAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCA 31869
Query 17393 -AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATC 17451
|||||| | | || |||||| |||| || || | || | ||||| | | ||
Sbjct 31870 GAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTC 31927
Query 17452 TTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATT 17511
||||| | |||||||| | || |||| ||| | || || | || |||||| | ||
Sbjct 31928 CTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTATACGTTTT 31987
Query 17512 CCAAATATCAT 17522
|||||||||||
Sbjct 31988 CCAAATATCAT 31998
>seq37045
Length=3135053
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| ||||||||||||||||| || |||||||| | || |||||| |||||||||||
Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||||| || || || || |||||||| || || || || | ||||| |
Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341
Query 17106 C 17106
|
Sbjct 1579342 C 1579342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516668929508160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |