Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 260 1e-64
seq30183 129 6e-25
seq43468 107 2e-18
seq37045 102 8e-17
>seq9420
Length=356144
Score = 260 bits (288), Expect = 1e-64
Identities = 600/889 (67%), Gaps = 26/889 (3%)
Strand=Plus/Plus
Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961
|| ||||| || || || || || || | || || |||||||| || |||| |
Sbjct 52597 ACTCCCATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT----- 52651
Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019
|| ||||| |||||||| ||||| || || || ||||||| ||| | ||||
Sbjct 52652 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAAC--CTTGCTCAAACCCA 52709
Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078
||||| | | ||| ||||| ||||| || || ||||| ||||| ||| ||||||
Sbjct 52710 GTTCC--AGCATGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 52766
Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138
|| || ||| | || || | || | || | |||| ||||||||| ||| ||
Sbjct 52767 ATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCA 52826
Query 16139 TCTTTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACAT 16197
| |||| || || | ||| | | ||| ||| | || |||||||| |||||
Sbjct 52827 TTGATAATTATTTCTCTTACTCTCTACTCCAGT-GGTTTGTGTACCAGGTGTTTGAACAT 52885
Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257
|| || || || || || |||| || || |||||||| |||||||| |||||||| ||
Sbjct 52886 CAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGT 52945
Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317
| || ||||| |||||||||||| | ||||||||||| ||||| | || |||||
Sbjct 52946 GAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAA 53005
Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377
|| | || || | | ||||| | | | ||||| | || ||||| ||||| |
Sbjct 53006 GA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTC 53062
Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437
| |||||| | | |||| || || || | || | |||| ||||||||| ||||
Sbjct 53063 CCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGC 53122
Query 16438 CTTAA--ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495
|| | | || ||| |||| | | || | |||| || || ||||| || |||||
Sbjct 53123 ATTGAGGAGAAATTCCCTTTCTTTGGGATCTT--TTATGTAAGTGTCAATAAGGAAACTA 53180
Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555
|||||||| || ||||||||||||||||| || || || ||| |||| || || || ||
Sbjct 53181 TACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCT 53240
Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615
| || || ||||| | |||||| ||| ||| ||| ||||| || || || ||||||
Sbjct 53241 GTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 53300
Query 16616 GCAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673
|| |||| ||||| || ||| | | || |||| | | || | | | || |
Sbjct 53301 GCTGCAAAGAAAACCAGAACATGGGAT--ATAAAATCTCTCTCCTTGGGCTTCAGGGATT 53358
Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733
||| | | || ||||| | ||||| || || | ||||| ||| ||| | |
Sbjct 53359 CCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCG 53418
Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782
|||| |||||||| | ||| ||||||| ||| | |||| || | |||
Sbjct 53419 CCTTCTTATACATCTGCCAGATATCATGGTACTCGGTGGGGAAGATGAC 53467
>seq30183
Length=85853
Score = 129 bits (142), Expect = 6e-25
Identities = 363/551 (66%), Gaps = 11/551 (2%)
Strand=Plus/Plus
Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273
|| |||| || || || ||||| |||||||| |||||||| || | || ||||| |
Sbjct 31455 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 31514
Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333
||||||||||| | |||||||||| ||||| || || |||||| | | | || ||
Sbjct 31515 CCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAGGTGCTTTCCACT 31574
Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393
||||| || | | ||| | | ||| | ||||| || | |||||| | |
Sbjct 31575 AGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCAATCCAATACAAG 31634
Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCT 16451
||||| | || || | || | || | ||| ||||| ||||| || | | || |||
Sbjct 31635 ACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTCC 31693
Query 16452 CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTA 16511
| |||| | |||| || || || ||||| || | | | | || || || |||
Sbjct 31694 C--TTTCTTTGTTATC--TTTAATGTGTGTCAATAAGGAGATTATTTATGTCAGAATGTG 31749
Query 16512 TGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCA 16571
|||| ||| | || | || || ||||||||||| | || | || || | |||
Sbjct 31750 TGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTT 31809
Query 16572 CGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC- 16630
|||| ||||| ||| ||| |||| || || || |||| ||| ||||| || |||
Sbjct 31810 GAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCA 31869
Query 16631 -AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689
||||| | | || |||||| |||| |||| | || | ||| | | ||
Sbjct 31870 GAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTC 31927
Query 16690 TTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTT 16749
||||| | |||||||| | | | |||| || | || || | || |||||| ||||
Sbjct 31928 CTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTATACGTTTT 31987
Query 16750 CCAAATATCAT 16760
|||||||||||
Sbjct 31988 CCAAATATCAT 31998
>seq43468
Length=1795776
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| ||||||||||| | |||||||| |||| ||||
Sbjct 1442084 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1442025
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| |
Sbjct 1442024 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1441965
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 1441964 CCACCACTCTTTCC 1441951
>seq37045
Length=3135053
Score = 102 bits (112), Expect = 8e-17
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| ||||||||||||||||| |||||||| || | || ||||| ||||||||||||
Sbjct 1579224 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1579283
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||||| ||||| || || |||||||| || || || || | ||||| ||
Sbjct 1579284 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 1579342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 510548115147840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |