Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9420 260 1e-64 seq30183 129 6e-25 seq43468 107 2e-18 seq37045 102 8e-17 >seq9420 Length=356144 Score = 260 bits (288), Expect = 1e-64 Identities = 600/889 (67%), Gaps = 26/889 (3%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || || || | || || |||||||| || |||| | Sbjct 52597 ACTCCCATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT----- 52651 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| || || || ||||||| ||| | |||| Sbjct 52652 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAAC--CTTGCTCAAACCCA 52709 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 ||||| | | ||| ||||| ||||| || || ||||| ||||| ||| |||||| Sbjct 52710 GTTCC--AGCATGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 52766 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || ||| | || || | || | || | |||| ||||||||| ||| || Sbjct 52767 ATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCA 52826 Query 16139 TCTTTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACAT 16197 | |||| || || | ||| | | ||| ||| | || |||||||| ||||| Sbjct 52827 TTGATAATTATTTCTCTTACTCTCTACTCCAGT-GGTTTGTGTACCAGGTGTTTGAACAT 52885 Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || || || || || || |||| || || |||||||| |||||||| |||||||| || Sbjct 52886 CAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGT 52945 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | || ||||| |||||||||||| | ||||||||||| ||||| | || ||||| Sbjct 52946 GAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAA 53005 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 || | || || | | ||||| | | | ||||| | || ||||| ||||| | Sbjct 53006 GA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTC 53062 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||| | | |||| || || || | || | |||| ||||||||| |||| Sbjct 53063 CCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGC 53122 Query 16438 CTTAA--ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | | || ||| |||| | | || | |||| || || ||||| || ||||| Sbjct 53123 ATTGAGGAGAAATTCCCTTTCTTTGGGATCTT--TTATGTAAGTGTCAATAAGGAAACTA 53180 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||||||| || ||||||||||||||||| || || || ||| |||| || || || || Sbjct 53181 TACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCT 53240 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || ||||| | |||||| ||| ||| ||| ||||| || || || |||||| Sbjct 53241 GTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 53300 Query 16616 GCAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 || |||| ||||| || ||| | | || |||| | | || | | | || | Sbjct 53301 GCTGCAAAGAAAACCAGAACATGGGAT--ATAAAATCTCTCTCCTTGGGCTTCAGGGATT 53358 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||| | | || ||||| | ||||| || || | ||||| ||| ||| | | Sbjct 53359 CCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCG 53418 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 |||| |||||||| | ||| ||||||| ||| | |||| || | ||| Sbjct 53419 CCTTCTTATACATCTGCCAGATATCATGGTACTCGGTGGGGAAGATGAC 53467 >seq30183 Length=85853 Score = 129 bits (142), Expect = 6e-25 Identities = 363/551 (66%), Gaps = 11/551 (2%) Strand=Plus/Plus Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 || |||| || || || ||||| |||||||| |||||||| || | || ||||| | Sbjct 31455 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 31514 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 ||||||||||| | |||||||||| ||||| || || |||||| | | | || || Sbjct 31515 CCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAGGTGCTTTCCACT 31574 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 ||||| || | | ||| | | ||| | ||||| || | |||||| | | Sbjct 31575 AGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCAATCCAATACAAG 31634 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCT 16451 ||||| | || || | || | || | ||| ||||| ||||| || | | || ||| Sbjct 31635 ACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTCC 31693 Query 16452 CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTA 16511 | |||| | |||| || || || ||||| || | | | | || || || ||| Sbjct 31694 C--TTTCTTTGTTATC--TTTAATGTGTGTCAATAAGGAGATTATTTATGTCAGAATGTG 31749 Query 16512 TGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCA 16571 |||| ||| | || | || || ||||||||||| | || | || || | ||| Sbjct 31750 TGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTT 31809 Query 16572 CGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC- 16630 |||| ||||| ||| ||| |||| || || || |||| ||| ||||| || ||| Sbjct 31810 GAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCA 31869 Query 16631 -AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 ||||| | | || |||||| |||| |||| | || | ||| | | || Sbjct 31870 GAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTC 31927 Query 16690 TTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTT 16749 ||||| | |||||||| | | | |||| || | || || | || |||||| |||| Sbjct 31928 CTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTATACGTTTT 31987 Query 16750 CCAAATATCAT 16760 ||||||||||| Sbjct 31988 CCAAATATCAT 31998 >seq43468 Length=1795776 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 1442084 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1442025 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 1442024 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1441965 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 1441964 CCACCACTCTTTCC 1441951 >seq37045 Length=3135053 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||||||||| |||||||| || | || ||||| |||||||||||| Sbjct 1579224 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1579283 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 1579284 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 1579342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510548115147840