Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9420 320 2e-82 seq43468 116 4e-21 seq19734 114 2e-20 seq37045 104 3e-17 seq38390 89.7 6e-13 >seq9420 Length=356144 Score = 320 bits (354), Expect = 2e-82 Identities = 639/939 (68%), Gaps = 26/939 (3%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 23844 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 | || || || | || | || || || || || || || | | ||| ||||| | Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 52661 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964 |||| || || |||| || || | | | | | || |||| ||| || Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCATG- 52720 Query 23965 ATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 24024 ||| ||||| |||||||| || ||| ||||| | |||||||| || ||| | | Sbjct 52721 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 52779 Query 24025 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 24084 | || || | ||| |||| || ||||| ||||| || || || | | || || Sbjct 52780 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 52839 Query 24085 ATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 24143 ||||||| | | || || | | | | | | | ||||| ||||||| || || ||| Sbjct 52840 CTCTTACTCTCTACTCCAGTGGTTTG-TGTACCAGGTGTTTGAACATCAGGCAAGCAAAA 52898 Query 24144 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 24203 || ||||||| |||||| ||||| ||||| | ||| |||||||| ||||| || ||||| Sbjct 52899 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 52958 Query 24204 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 24263 || || || || || ||||| ||||| || ||||| | |||||||||| | ||||| Sbjct 52959 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCC 53015 Query 24264 ACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 24320 |||| |||||| | | || | ||| ||||| | | | |||| ||||| | Sbjct 53016 GCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGC 53075 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 |||||||| |||||||| || ||||||||||| || || | ||||| | |||| | Sbjct 53076 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAAT 53135 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | |||| || |||||| | || || ||||| | | |||||||||||| ||||| Sbjct 53136 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGT 53195 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || ||||| ||||| || || ||||||| | || || || ||||| |||||| Sbjct 53196 ATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCT 53255 Query 24501 ATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 24560 | |||||| || | || |||||||| ||||| || ||||| |||||||| || || Sbjct 53256 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 53315 Query 24561 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----AT 24616 | ||||| |||||||| | | || | ||| || ||||| || || || Sbjct 53316 AGAACATGGGATATAAAATCTCTCTCCT-TGGGCTTCAGGGATTCC---CAGTGCCAAAT 53371 Query 24617 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 || || || | ||||| || || | ||||| || || || || ||||| |||||||| Sbjct 53372 GTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACAT 53431 Query 24677 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | |||||| ||||| || | | || || || ||||| Sbjct 53432 CTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470 >seq43468 Length=1795776 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 1442082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1442023 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1442022 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1441963 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 1441962 ACCACTCTTTCCCC 1441949 >seq19734 Length=6466590 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 5938678 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 5938619 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 5938618 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 5938559 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 5938558 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 5938508 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 5935841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 5935782 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 5935781 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 5935722 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 5935721 CTGTTTCTTATACCATA 5935705 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| ||||||||||||||||||||||| | || |||||||||| | Sbjct 5924698 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 5924639 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 5924638 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 5924579 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 || |||| ||| || | | ||||||| || Sbjct 5924578 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 5924546 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 5906921 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 5906862 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 5906861 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 5906802 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 5906801 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 5906756 >seq37045 Length=3135053 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 1581327 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1581386 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 1581387 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1581446 >seq38390 Length=1205360 Score = 89.7 bits (98), Expect = 6e-13 Identities = 177/258 (69%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | | ||| ||| | || ||| |||||| Sbjct 764300 TCCAGTGGAACCAAAACCTCCTGAACCCCTTT--CGGTATCATCCAAAGCTTGAACTTCT 764357 Query 21941 TTCAGTTCTGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATT 21999 | | |||||||||| | | | |||| | || ||||| || ||| ||| ||| | || Sbjct 764358 TCTATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTT 764417 Query 22000 TACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATC 22059 || | ||| | | ||| ||| |||| || | | || | |||||| |||||||| Sbjct 764418 GACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAATACCAACATTTCCTCTATAATC 764477 Query 22060 TTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGG 22116 ||| |||| ||||| |||||| |||||| | |||| | || || |||| || Sbjct 764478 TTCACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGG 764537 Query 22117 AGCTATTCTACCATAGCA 22134 ||||| ||| ||||| || Sbjct 764538 AGCTACTCTTCCATAACA 764555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592715894981760