Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq30845 235 6e-57
seq11758 174 2e-38
seq43609 159 4e-34
seq23601 102 1e-16
>seq30845
Length=2656158
Score = 235 bits (260), Expect = 6e-57
Identities = 603/910 (66%), Gaps = 11/910 (1%)
Strand=Plus/Minus
Query 176345 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATA 176403
||| ||| | || ||| | |||||| || ||||| | || |||| | ||||||||
Sbjct 2074141 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAACG 2074083
Query 176404 TCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTAC 176463
| | |||||||| || |||||| ||||| || | || || | || ||||| | |
Sbjct 2074082 TGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACC 2074023
Query 176464 TGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 176523
| | ||| |||| || || ||| |||| || || || || | || || ||||| ||||
Sbjct 2074022 TACTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 2073963
Query 176524 ATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTG 176583
|| | | | | ||| | ||| || || | | ||||||| || ||| |||
Sbjct 2073962 ATGTCAG---GGAGCATAACTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGT 2073906
Query 176584 TGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGT 176643
| | ||||| |||||||| || |||||| ||| ||||| || || | |||||||
Sbjct 2073905 TTTATTACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGT 2073846
Query 176644 ATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCAT 176701
| || || ||||| ||||||| ||| || ||| | || || |||| ||| ||
Sbjct 2073845 ACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACCTTTGGTAT 2073788
Query 176702 AGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 176761
| ||| | | |||||| ||||||| | || | || ||||||||| | ||
Sbjct 2073787 CATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTGGCAGCTCTTCCTGAATTTATTTT 2073728
Query 176762 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 176820
||||| |||| | | ||||| || || | || |||||| ||
Sbjct 2073727 CCATGGGACTGAAGA-GTTGTTTCCAGGGTCTCTTTGCAGTGCTATTTACCCACAGGATA 2073669
Query 176821 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 176880
| | || ||||||| |||| | || ||| | || ||||| | |
Sbjct 2073668 CAGTAGATAGCTGGAGGCATTTCCACACTCTGAAAATGACCGTCTTGTGTCTCGCACTCC 2073609
Query 176881 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 176940
|||||||| ||||||| |||||||| | ||| |||| || ||| ||||| ||||||
Sbjct 2073608 CTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 2073549
Query 176941 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 177000
| || || ||||||||||||||| ||||||| ||||||||||||| | | ||| |||
Sbjct 2073548 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTT 2073489
Query 177001 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACC 177060
| |||||||||||||| | | | |||| | ||||||| ||| | | | | || |
Sbjct 2073488 TCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTATCAATCCATCTTATTTGGAC 2073429
Query 177061 TGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 177120
| | |||| | ||||| | ||||| ||| ||||| | || | ||||
Sbjct 2073428 TTGACTGTGAACGGAGCAAGCATCTGGACCTGGTCGTGCTGGTGACGGAGGTGACTGCCT 2073369
Query 177121 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 177180
|| | ||||| ||| | ||||||||||||||||| || | || |||| || | |
Sbjct 2073368 ACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGCTGGAGAGAGATTCCGCAAGT 2073309
Query 177181 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 177240
||||| ||||||||||||||| ||||| ||| |||| || |||||||| ||||
Sbjct 2073308 ACCTGCACCACTTCTTCCACAGGCACGTGCTCATGCACCTGGCCAGATACATCCCATTCC 2073249
Query 177241 TGTCTGGTGA 177250
| || ||||
Sbjct 2073248 TTCCTAGTGA 2073239
Score = 235 bits (260), Expect = 6e-57
Identities = 603/910 (66%), Gaps = 11/910 (1%)
Strand=Plus/Minus
Query 9459 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATA 9517
||| ||| | || ||| | |||||| || ||||| | || |||| | ||||||||
Sbjct 2074141 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAACG 2074083
Query 9518 TCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTAC 9577
| | |||||||| || |||||| ||||| || | || || | || ||||| | |
Sbjct 2074082 TGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACC 2074023
Query 9578 TGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 9637
| | ||| |||| || || ||| |||| || || || || | || || ||||| ||||
Sbjct 2074022 TACTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 2073963
Query 9638 ATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTG 9697
|| | | | | ||| | ||| || || | | ||||||| || ||| |||
Sbjct 2073962 ATGTCAG---GGAGCATAACTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGT 2073906
Query 9698 TGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGT 9757
| | ||||| |||||||| || |||||| ||| ||||| || || | |||||||
Sbjct 2073905 TTTATTACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGT 2073846
Query 9758 ATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCAT 9815
| || || ||||| ||||||| ||| || ||| | || || |||| ||| ||
Sbjct 2073845 ACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACCTTTGGTAT 2073788
Query 9816 AGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 9875
| ||| | | |||||| ||||||| | || | || ||||||||| | ||
Sbjct 2073787 CATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTGGCAGCTCTTCCTGAATTTATTTT 2073728
Query 9876 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 9934
||||| |||| | | ||||| || || | || |||||| ||
Sbjct 2073727 CCATGGGACTGAAGA-GTTGTTTCCAGGGTCTCTTTGCAGTGCTATTTACCCACAGGATA 2073669
Query 9935 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 9994
| | || ||||||| |||| | || ||| | || ||||| | |
Sbjct 2073668 CAGTAGATAGCTGGAGGCATTTCCACACTCTGAAAATGACCGTCTTGTGTCTCGCACTCC 2073609
Query 9995 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 10054
|||||||| ||||||| |||||||| | ||| |||| || ||| ||||| ||||||
Sbjct 2073608 CTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 2073549
Query 10055 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 10114
| || || ||||||||||||||| ||||||| ||||||||||||| | | ||| |||
Sbjct 2073548 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTT 2073489
Query 10115 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACC 10174
| |||||||||||||| | | | |||| | ||||||| ||| | | | | || |
Sbjct 2073488 TCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTATCAATCCATCTTATTTGGAC 2073429
Query 10175 TGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 10234
| | |||| | ||||| | ||||| ||| ||||| | || | ||||
Sbjct 2073428 TTGACTGTGAACGGAGCAAGCATCTGGACCTGGTCGTGCTGGTGACGGAGGTGACTGCCT 2073369
Query 10235 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 10294
|| | ||||| ||| | ||||||||||||||||| || | || |||| || | |
Sbjct 2073368 ACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGCTGGAGAGAGATTCCGCAAGT 2073309
Query 10295 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 10354
||||| ||||||||||||||| ||||| ||| |||| || |||||||| ||||
Sbjct 2073308 ACCTGCACCACTTCTTCCACAGGCACGTGCTCATGCACCTGGCCAGATACATCCCATTCC 2073249
Query 10355 TGTCTGGTGA 10364
| || ||||
Sbjct 2073248 TTCCTAGTGA 2073239
Score = 91.5 bits (100), Expect = 2e-13
Identities = 173/252 (69%), Gaps = 7/252 (3%)
Strand=Plus/Plus
Query 9543 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 9602
||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| |
Sbjct 2132620 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 2132679
Query 9603 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATA--TTGGAATGTATCATGATTGG 9660
||| || || || || |||| || | ||| |||| | ||| ||| || || |||
Sbjct 2132680 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTTG--ATGGAT---GACTGG 2132734
Query 9661 ACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGC 9720
| || ||| | || ||||||| | ||| || | | ||||| ||||||||
Sbjct 2132735 ATCTTCGGTGATGCCATGTGTAAGGTCCTCTCTGGGTTTTATTACACAGGCTTGTACAGC 2132794
Query 9721 CAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTA 9780
|| |||||| |||||||||||| || | || ||||| || || | ||| |||| ||
Sbjct 2132795 GAGATCTTTTTCATCATCCTGCTGACGATTGATAGGTACCTGGCCATCGTCCATGCCGTG 2132854
Query 9781 ACTGCTTTGAGG 9792
||| ||||||
Sbjct 2132855 TTTGCCTTGAGG 2132866
Score = 91.5 bits (100), Expect = 2e-13
Identities = 173/252 (69%), Gaps = 7/252 (3%)
Strand=Plus/Plus
Query 176429 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 176488
||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| |
Sbjct 2132620 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 2132679
Query 176489 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATA--TTGGAATGTATCATGATTGG 176546
||| || || || || |||| || | ||| |||| | ||| ||| || || |||
Sbjct 2132680 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTTG--ATGGAT---GACTGG 2132734
Query 176547 ACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGC 176606
| || ||| | || ||||||| | ||| || | | ||||| ||||||||
Sbjct 2132735 ATCTTCGGTGATGCCATGTGTAAGGTCCTCTCTGGGTTTTATTACACAGGCTTGTACAGC 2132794
Query 176607 CAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTA 176666
|| |||||| |||||||||||| || | || ||||| || || | ||| |||| ||
Sbjct 2132795 GAGATCTTTTTCATCATCCTGCTGACGATTGATAGGTACCTGGCCATCGTCCATGCCGTG 2132854
Query 176667 ACTGCTTTGAGG 176678
||| ||||||
Sbjct 2132855 TTTGCCTTGAGG 2132866
>seq11758
Length=1720543
Score = 174 bits (192), Expect = 2e-38
Identities = 133/157 (85%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||||||| |||||||| ||||||||| || || || ||||||||||||||||| | |||
Sbjct 1620348 CAGCGCCGCAGCCTCAGCCTGAGGGTCTTCAGATTCTCCCCCAGGGAGTTCACATGCTCC 1620407
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| ||| | | ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1620408 TTGAT---GTCTGGGTCGTGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 1620464
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
||||||||||||| ||| ||||| |||||||||||||
Sbjct 1620465 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 1620501
Score = 123 bits (136), Expect = 3e-23
Identities = 85/96 (89%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980
||||||||| |||||| | ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1618026 CTCAGTTTTGCATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 1618085
Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
| |||||||| |||||||| ||||| || |||||||
Sbjct 1618086 CACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 1618121
>seq43609
Length=3422226
Score = 159 bits (176), Expect = 4e-34
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
|||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| |||
Sbjct 1891083 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1891024
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| || || |||||||| ||||| | |||||||||||||||||| ||||| | | | ||
Sbjct 1891023 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1890964
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|| ||||||||||| ||| ||||| || ||||| |||||
Sbjct 1890963 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 1890923
>seq23601
Length=1137639
Score = 102 bits (112), Expect = 1e-16
Identities = 210/305 (69%), Gaps = 17/305 (6%)
Strand=Plus/Minus
Query 145582 TCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTA-TGTCCTCCACCCGCCTCAGGATCCT 145640
|||| | |||||| ||||| |||| ||||| |||| || || | ||||| ||
Sbjct 137059 TCCACCTGAAAGTCTTCCGCT-TGAAATCATCACGTGTC-TCAACTTTCTGAAGGATTCT 137002
Query 145641 GAGCCT-GGGAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGG 145698
|||| | |||||||| | || ||| ||| ||||| | ||||| | | | |||
Sbjct 137001 GAGCTTTGGGAAAGGTCTTGGTTCTCTCTGA--AGCTGAATTTTCAGTTTCGCAATGTGA 136944
Query 145699 TTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTG 145758
| ||||| || | ||| | |||| || | ||||| ||||||| || |||||
Sbjct 136943 CTTAGGTAAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCCGTG 136884
Query 145759 AGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG-GCACCCCCAG 145817
| ||| |||| || || || ||||||| ||||||||| |||||||||| ||||||
Sbjct 136883 ATGTGCGCGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGTGCACCCA--- 136827
Query 145818 CCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAA 145877
| |||| || | || | |||||||||||| ||||| || | ||||| ||||
Sbjct 136826 ------GGCCCCTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAA 136773
Query 145878 CTGGC 145882
|||||
Sbjct 136772 CTGGC 136768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589077268908480
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