Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq30845 235 6e-57 seq11758 174 2e-38 seq43609 159 4e-34 seq23601 102 1e-16 >seq30845 Length=2656158 Score = 235 bits (260), Expect = 6e-57 Identities = 603/910 (66%), Gaps = 11/910 (1%) Strand=Plus/Minus Query 176345 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATA 176403 ||| ||| | || ||| | |||||| || ||||| | || |||| | |||||||| Sbjct 2074141 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAACG 2074083 Query 176404 TCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTAC 176463 | | |||||||| || |||||| ||||| || | || || | || ||||| | | Sbjct 2074082 TGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACC 2074023 Query 176464 TGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 176523 | | ||| |||| || || ||| |||| || || || || | || || ||||| |||| Sbjct 2074022 TACTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 2073963 Query 176524 ATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTG 176583 || | | | | ||| | ||| || || | | ||||||| || ||| ||| Sbjct 2073962 ATGTCAG---GGAGCATAACTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGT 2073906 Query 176584 TGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGT 176643 | | ||||| |||||||| || |||||| ||| ||||| || || | ||||||| Sbjct 2073905 TTTATTACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGT 2073846 Query 176644 ATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCAT 176701 | || || ||||| ||||||| ||| || ||| | || || |||| ||| || Sbjct 2073845 ACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACCTTTGGTAT 2073788 Query 176702 AGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 176761 | ||| | | |||||| ||||||| | || | || ||||||||| | || Sbjct 2073787 CATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTGGCAGCTCTTCCTGAATTTATTTT 2073728 Query 176762 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 176820 ||||| |||| | | ||||| || || | || |||||| || Sbjct 2073727 CCATGGGACTGAAGA-GTTGTTTCCAGGGTCTCTTTGCAGTGCTATTTACCCACAGGATA 2073669 Query 176821 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 176880 | | || ||||||| |||| | || ||| | || ||||| | | Sbjct 2073668 CAGTAGATAGCTGGAGGCATTTCCACACTCTGAAAATGACCGTCTTGTGTCTCGCACTCC 2073609 Query 176881 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 176940 |||||||| ||||||| |||||||| | ||| |||| || ||| ||||| |||||| Sbjct 2073608 CTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 2073549 Query 176941 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 177000 | || || ||||||||||||||| ||||||| ||||||||||||| | | ||| ||| Sbjct 2073548 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTT 2073489 Query 177001 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACC 177060 | |||||||||||||| | | | |||| | ||||||| ||| | | | | || | Sbjct 2073488 TCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTATCAATCCATCTTATTTGGAC 2073429 Query 177061 TGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 177120 | | |||| | ||||| | ||||| ||| ||||| | || | |||| Sbjct 2073428 TTGACTGTGAACGGAGCAAGCATCTGGACCTGGTCGTGCTGGTGACGGAGGTGACTGCCT 2073369 Query 177121 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 177180 || | ||||| ||| | ||||||||||||||||| || | || |||| || | | Sbjct 2073368 ACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGCTGGAGAGAGATTCCGCAAGT 2073309 Query 177181 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 177240 ||||| ||||||||||||||| ||||| ||| |||| || |||||||| |||| Sbjct 2073308 ACCTGCACCACTTCTTCCACAGGCACGTGCTCATGCACCTGGCCAGATACATCCCATTCC 2073249 Query 177241 TGTCTGGTGA 177250 | || |||| Sbjct 2073248 TTCCTAGTGA 2073239 Score = 235 bits (260), Expect = 6e-57 Identities = 603/910 (66%), Gaps = 11/910 (1%) Strand=Plus/Minus Query 9459 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATA 9517 ||| ||| | || ||| | |||||| || ||||| | || |||| | |||||||| Sbjct 2074141 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAACG 2074083 Query 9518 TCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTAC 9577 | | |||||||| || |||||| ||||| || | || || | || ||||| | | Sbjct 2074082 TGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACC 2074023 Query 9578 TGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 9637 | | ||| |||| || || ||| |||| || || || || | || || ||||| |||| Sbjct 2074022 TACTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 2073963 Query 9638 ATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTG 9697 || | | | | ||| | ||| || || | | ||||||| || ||| ||| Sbjct 2073962 ATGTCAG---GGAGCATAACTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGT 2073906 Query 9698 TGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGT 9757 | | ||||| |||||||| || |||||| ||| ||||| || || | ||||||| Sbjct 2073905 TTTATTACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGT 2073846 Query 9758 ATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCAT 9815 | || || ||||| ||||||| ||| || ||| | || || |||| ||| || Sbjct 2073845 ACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACCTTTGGTAT 2073788 Query 9816 AGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 9875 | ||| | | |||||| ||||||| | || | || ||||||||| | || Sbjct 2073787 CATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTGGCAGCTCTTCCTGAATTTATTTT 2073728 Query 9876 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 9934 ||||| |||| | | ||||| || || | || |||||| || Sbjct 2073727 CCATGGGACTGAAGA-GTTGTTTCCAGGGTCTCTTTGCAGTGCTATTTACCCACAGGATA 2073669 Query 9935 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 9994 | | || ||||||| |||| | || ||| | || ||||| | | Sbjct 2073668 CAGTAGATAGCTGGAGGCATTTCCACACTCTGAAAATGACCGTCTTGTGTCTCGCACTCC 2073609 Query 9995 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 10054 |||||||| ||||||| |||||||| | ||| |||| || ||| ||||| |||||| Sbjct 2073608 CTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 2073549 Query 10055 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 10114 | || || ||||||||||||||| ||||||| ||||||||||||| | | ||| ||| Sbjct 2073548 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTT 2073489 Query 10115 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACC 10174 | |||||||||||||| | | | |||| | ||||||| ||| | | | | || | Sbjct 2073488 TCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTATCAATCCATCTTATTTGGAC 2073429 Query 10175 TGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 10234 | | |||| | ||||| | ||||| ||| ||||| | || | |||| Sbjct 2073428 TTGACTGTGAACGGAGCAAGCATCTGGACCTGGTCGTGCTGGTGACGGAGGTGACTGCCT 2073369 Query 10235 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 10294 || | ||||| ||| | ||||||||||||||||| || | || |||| || | | Sbjct 2073368 ACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGCTGGAGAGAGATTCCGCAAGT 2073309 Query 10295 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 10354 ||||| ||||||||||||||| ||||| ||| |||| || |||||||| |||| Sbjct 2073308 ACCTGCACCACTTCTTCCACAGGCACGTGCTCATGCACCTGGCCAGATACATCCCATTCC 2073249 Query 10355 TGTCTGGTGA 10364 | || |||| Sbjct 2073248 TTCCTAGTGA 2073239 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/252 (69%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 9543 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 9602 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 2132620 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 2132679 Query 9603 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATA--TTGGAATGTATCATGATTGG 9660 ||| || || || || |||| || | ||| |||| | ||| ||| || || ||| Sbjct 2132680 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTTG--ATGGAT---GACTGG 2132734 Query 9661 ACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGC 9720 | || ||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 2132735 ATCTTCGGTGATGCCATGTGTAAGGTCCTCTCTGGGTTTTATTACACAGGCTTGTACAGC 2132794 Query 9721 CAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTA 9780 || |||||| |||||||||||| || | || ||||| || || | ||| |||| || Sbjct 2132795 GAGATCTTTTTCATCATCCTGCTGACGATTGATAGGTACCTGGCCATCGTCCATGCCGTG 2132854 Query 9781 ACTGCTTTGAGG 9792 ||| |||||| Sbjct 2132855 TTTGCCTTGAGG 2132866 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/252 (69%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 176429 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 176488 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 2132620 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGACCT 2132679 Query 176489 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATA--TTGGAATGTATCATGATTGG 176546 ||| || || || || |||| || | ||| |||| | ||| ||| || || ||| Sbjct 2132680 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTTG--ATGGAT---GACTGG 2132734 Query 176547 ACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGC 176606 | || ||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 2132735 ATCTTCGGTGATGCCATGTGTAAGGTCCTCTCTGGGTTTTATTACACAGGCTTGTACAGC 2132794 Query 176607 CAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTA 176666 || |||||| |||||||||||| || | || ||||| || || | ||| |||| || Sbjct 2132795 GAGATCTTTTTCATCATCCTGCTGACGATTGATAGGTACCTGGCCATCGTCCATGCCGTG 2132854 Query 176667 ACTGCTTTGAGG 176678 ||| |||||| Sbjct 2132855 TTTGCCTTGAGG 2132866 >seq11758 Length=1720543 Score = 174 bits (192), Expect = 2e-38 Identities = 133/157 (85%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||||||| ||||||||| || || || ||||||||||||||||| | ||| Sbjct 1620348 CAGCGCCGCAGCCTCAGCCTGAGGGTCTTCAGATTCTCCCCCAGGGAGTTCACATGCTCC 1620407 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | ||||||||| || |||||||||||||||||||||||||||||| Sbjct 1620408 TTGAT---GTCTGGGTCGTGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 1620464 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||| ||| ||||| ||||||||||||| Sbjct 1620465 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 1620501 Score = 123 bits (136), Expect = 3e-23 Identities = 85/96 (89%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 ||||||||| |||||| | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 1618026 CTCAGTTTTGCATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 1618085 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| |||||||| ||||| || ||||||| Sbjct 1618086 CACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 1618121 >seq43609 Length=3422226 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 1891083 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1891024 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| | | | || Sbjct 1891023 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1890964 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || ||||| ||||| Sbjct 1890963 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 1890923 >seq23601 Length=1137639 Score = 102 bits (112), Expect = 1e-16 Identities = 210/305 (69%), Gaps = 17/305 (6%) Strand=Plus/Minus Query 145582 TCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTA-TGTCCTCCACCCGCCTCAGGATCCT 145640 |||| | |||||| ||||| |||| ||||| |||| || || | ||||| || Sbjct 137059 TCCACCTGAAAGTCTTCCGCT-TGAAATCATCACGTGTC-TCAACTTTCTGAAGGATTCT 137002 Query 145641 GAGCCT-GGGAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGG 145698 |||| | |||||||| | || ||| ||| ||||| | ||||| | | | ||| Sbjct 137001 GAGCTTTGGGAAAGGTCTTGGTTCTCTCTGA--AGCTGAATTTTCAGTTTCGCAATGTGA 136944 Query 145699 TTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTG 145758 | ||||| || | ||| | |||| || | ||||| ||||||| || ||||| Sbjct 136943 CTTAGGTAAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCCGTG 136884 Query 145759 AGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG-GCACCCCCAG 145817 | ||| |||| || || || ||||||| ||||||||| |||||||||| |||||| Sbjct 136883 ATGTGCGCGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGTGCACCCA--- 136827 Query 145818 CCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAA 145877 | |||| || | || | |||||||||||| ||||| || | ||||| |||| Sbjct 136826 ------GGCCCCTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAA 136773 Query 145878 CTGGC 145882 ||||| Sbjct 136772 CTGGC 136768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589077268908480