Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq43380 495 4e-135 seq2307 315 9e-81 seq42758 129 7e-25 >seq43380 Length=2932590 Score = 495 bits (548), Expect = 4e-135 Identities = 462/587 (79%), Gaps = 0/587 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 1747215 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 1747274 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||||| ||||||| ||||||||||||||||||||| || ||||||||| Sbjct 1747275 ACGGGCACACCGTCAGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACATCGTTGCGG 1747334 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| |||| || ||||||| ||| ||||| | |||||||| Sbjct 1747335 CACACCAGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 1747394 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || |||||||||||||| || || ||| ||||||| ||| Sbjct 1747395 GGGGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCACCCCCACACCGTTCACC 1747454 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || ||||||||||||||||| ||||| |||| ||| || ||||| ||||||| ||| Sbjct 1747455 TCCCACTTCTCGAAGAGCATGAAGTTGGGCTTGAACCCACCACCAGGTCGGACGTACTTG 1747514 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| || ||||| | |||| || ||| ||||| || || |||||||| |||||| Sbjct 1747515 AGGGAATTCAGAATCTCTTCGTTCTTGGTGTTCTCCTGATGCCCAAACTGGTTGCACGGG 1747574 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || ||||| ||||| ||||| | || ||||||| |||||||||||||||||| ||| Sbjct 1747575 AAGCCGAGCACCACCAGGCCCCGGGGCCCAAGGCGCCACTGCAGCTCGTTCATCTGGGTG 1747634 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || | ||||||| || | ||||||||||| || || ||||| || || | ||| |||| Sbjct 1747635 TAGTACCGGACCATGGTGCCTCAGAGGGAAGCCACATTCTCCATAAGTAGCACCTTGCCC 1747694 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | |||| | ||||||||| || || |||| | ||||||||| |||||||||||| Sbjct 1747695 CGCAGTGAGCCCAGGCTCACAGGCTCCCCGCCGGCCAGCGGGCGTGCCGAGAAGGCGTAC 1747754 Query 83597 ACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACA 83643 || || || | ||||||| || ||| | || || || |||| || Sbjct 1747755 ACTGACTGGGCCCCTGCCGCCGCTAGCCGAGCAGCACACATGGCGCA 1747801 >seq2307 Length=2686320 Score = 315 bits (348), Expect = 9e-81 Identities = 272/337 (81%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 1608690 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 1608631 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||||| |||||||||||||| |||||||||||||| || ||||||||| Sbjct 1608630 ACGGGCACACCGTCAGGGCCCACCAAGAACTTTTCGAAGTTCCAGGCAACATCGTTGCGG 1608571 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || ||||||| ||| ||||| | |||||||| Sbjct 1608570 CACACCGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 1608511 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||||||||| || |||||||||||||| || || |||| ||||||| ||| Sbjct 1608510 GGGACTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCCCCCCACCGTTCACC 1608451 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 1608450 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 1608391 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| || ||| |||| Sbjct 1608390 AGGGAATTCAGAATCTCTTCGTTCTTGGTGTTCTCCT 1608354 Score = 214 bits (236), Expect = 2e-50 Identities = 187/233 (80%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 1608106 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGCCCAAGGC 1608047 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| | Sbjct 1608046 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 1607987 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||| || | ||| |||||| | | |||| | |||||||| || || |||| Sbjct 1607986 CATTCTCGATAAGTAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGACTCCCCGCCGG 1607927 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGC 83623 | |||||| || |||||||||||||| || || | ||||||| || ||| Sbjct 1607926 CCAGCGGGCGCGCCGAGAAGGCGTACACCGACTGGGCCGCTGCCGCCGCTAGC 1607874 >seq42758 Length=2734037 Score = 129 bits (142), Expect = 7e-25 Identities = 208/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 93670 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 93728 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 93729 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 93788 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || || ||| ||| | | |||| ||||| Sbjct 93789 GCGGCTCCCTGGGCAAGAAGCAG-CTGGATCCGTCCCGCATCAAGCTCATCCGCCACTAC 93847 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| ||||| ||||| ||||| ||||| |||| | ||||| | Sbjct 93848 GTGCAGCTGCTCTACCCG----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 93903 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 93904 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 93952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607765559100480