Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq43380 495 4e-135
seq2307 315 9e-81
seq42758 129 7e-25
>seq43380
Length=2932590
Score = 495 bits (548), Expect = 4e-135
Identities = 462/587 (79%), Gaps = 0/587 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| ||||| | | | | ||||||| ||||| |||||||||||||
Sbjct 1747215 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 1747274
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|||||| ||||||| ||||||| ||||||||||||||||||||| || |||||||||
Sbjct 1747275 ACGGGCACACCGTCAGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACATCGTTGCGG 1747334
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| ||||||||| |||| || ||||||| ||| ||||| | ||||||||
Sbjct 1747335 CACACCAGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 1747394
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| || ||||||||||| || |||||||||||||| || || ||| ||||||| |||
Sbjct 1747395 GGGGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCACCCCCACACCGTTCACC 1747454
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|| ||||||||||||||||| ||||| |||| ||| || ||||| ||||||| |||
Sbjct 1747455 TCCCACTTCTCGAAGAGCATGAAGTTGGGCTTGAACCCACCACCAGGTCGGACGTACTTG 1747514
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416
|||||| || ||||| | |||| || ||| ||||| || || |||||||| ||||||
Sbjct 1747515 AGGGAATTCAGAATCTCTTCGTTCTTGGTGTTCTCCTGATGCCCAAACTGGTTGCACGGG 1747574
Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476
|| || ||||| ||||| ||||| | || ||||||| |||||||||||||||||| |||
Sbjct 1747575 AAGCCGAGCACCACCAGGCCCCGGGGCCCAAGGCGCCACTGCAGCTCGTTCATCTGGGTG 1747634
Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536
|| | ||||||| || | ||||||||||| || || ||||| || || | ||| ||||
Sbjct 1747635 TAGTACCGGACCATGGTGCCTCAGAGGGAAGCCACATTCTCCATAAGTAGCACCTTGCCC 1747694
Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596
|| | |||| | ||||||||| || || |||| | ||||||||| ||||||||||||
Sbjct 1747695 CGCAGTGAGCCCAGGCTCACAGGCTCCCCGCCGGCCAGCGGGCGTGCCGAGAAGGCGTAC 1747754
Query 83597 ACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACA 83643
|| || || | ||||||| || ||| | || || || |||| ||
Sbjct 1747755 ACTGACTGGGCCCCTGCCGCCGCTAGCCGAGCAGCACACATGGCGCA 1747801
>seq2307
Length=2686320
Score = 315 bits (348), Expect = 9e-81
Identities = 272/337 (81%), Gaps = 0/337 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| ||||| | | | | ||||||| ||||| |||||||||||||
Sbjct 1608690 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 1608631
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|||||| ||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct 1608630 ACGGGCACACCGTCAGGGCCCACCAAGAACTTTTCGAAGTTCCAGGCAACATCGTTGCGG 1608571
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| |||||||||| |||| || ||||||| ||| ||||| | ||||||||
Sbjct 1608570 CACACCGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 1608511
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| | ||||||||||| || |||||||||||||| || || |||| ||||||| |||
Sbjct 1608510 GGGACTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCCCCCCACCGTTCACC 1608451
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||||||||| ||||| |||||||| || ||||| ||||||| |||
Sbjct 1608450 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 1608391
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393
|||||| || ||||| | |||| || ||| ||||
Sbjct 1608390 AGGGAATTCAGAATCTCTTCGTTCTTGGTGTTCTCCT 1608354
Score = 214 bits (236), Expect = 2e-50
Identities = 187/233 (80%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || ||||| ||||| ||||| | || ||||
Sbjct 1608106 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGCCCAAGGC 1608047
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| |
Sbjct 1608046 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 1607987
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| |||||||| || | ||| |||||| | | |||| | |||||||| || || ||||
Sbjct 1607986 CATTCTCGATAAGTAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGACTCCCCGCCGG 1607927
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGC 83623
| |||||| || |||||||||||||| || || | ||||||| || |||
Sbjct 1607926 CCAGCGGGCGCGCCGAGAAGGCGTACACCGACTGGGCCGCTGCCGCCGCTAGC 1607874
>seq42758
Length=2734037
Score = 129 bits (142), Expect = 7e-25
Identities = 208/291 (71%), Gaps = 15/291 (5%)
Strand=Plus/Plus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| |||
Sbjct 93670 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 93728
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| || |||||||||| || ||| | |||||||
Sbjct 93729 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 93788
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| |||| || || ||| ||| | | |||| |||||
Sbjct 93789 GCGGCTCCCTGGGCAAGAAGCAG-CTGGATCCGTCCCGCATCAAGCTCATCCGCCACTAC 93847
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643
|||||| |||| ||||| ||||| ||||| ||||| |||| | ||||| |
Sbjct 93848 GTGCAGCTGCTCTACCCG----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 93903
Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
|| ||||| ||||||||||||||||| | |||||| || ||||||
Sbjct 93904 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 93952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 607765559100480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |