Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq42510 113 4e-20 seq39797 113 4e-20 seq33539 113 4e-20 seq44074 111 1e-19 seq17706 96.9 3e-15 seq44363 89.7 4e-13 seq43693 86.0 5e-12 seq36884 82.4 6e-11 >seq42510 Length=1301382 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 87354 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 87295 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 87294 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 87235 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 87234 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 87175 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 87174 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 87140 >seq39797 Length=2305578 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 1756923 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 1756982 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 1756983 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1757042 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 1757043 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1757102 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 1757103 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 1757137 >seq33539 Length=658333 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | || || || ||||| ||| ||| |||||| Sbjct 236825 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 236766 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 236765 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 236706 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 236705 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 236646 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 236645 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 236611 >seq44074 Length=2336235 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| || ||| |||| | Sbjct 1652955 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACTC 1652896 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 1652895 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1652836 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| | ||| || | || ||| Sbjct 1652835 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGAGTAC 1652776 Query 25212 AATATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||||| ||||||||||| Sbjct 1652775 AATATTCAAAAGGAGTCTACTCTTCA 1652750 >seq17706 Length=950375 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | | ||| || ||||| ||| ||| |||||| Sbjct 545298 AAAATGCAGAT-TTCGTGAAAACTCTTATGGGGAAGACCATCACCCTCGAGGTTGAACCC 545240 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || | | | | || | ||| || || ||||| ||||| | || ||| Sbjct 545239 TCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 545180 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||| | ||| || | || ||| Sbjct 545179 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGGTGGACGTACTTTGTCTGACTAC 545120 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| ||||||||||| | ||||| Sbjct 545119 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 545085 >seq44363 Length=166659 Score = 89.7 bits (98), Expect = 4e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||| |||||||| |||||||| ||||| ||| |||||||| ||| || | || | Sbjct 137981 ATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACT 138040 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||||| ||||||||||| | ||||| Sbjct 138041 ACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 138077 >seq43693 Length=2839110 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/119 (75%), Gaps = 11/119 (9%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| || || ||||| |||||||| |||||||| ||||| ||||||||| Sbjct 374632 GATAAGGAAGGAGTTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAATTGGAA 374691 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 | ||| | || ||||| ||||||||||| ||||||||||| | ||||| Sbjct 374692 G-----------ATGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 374739 >seq36884 Length=899181 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | | ||| | || || || ||||| ||| ||| |||||| Sbjct 628641 AAAATGCAGATTTTCGTGATAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 628582 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| || | | || | || || || | ||| ||||| | || | | Sbjct 628581 TCAGACACAATAGAAAATGTATAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCTGGT 628522 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || || ||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 628521 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 628462 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||||||||| || ||||||||||| | ||||| Sbjct 628461 AATATTCAAAAAGAGTCTACTCTTCATTTTGTGTT 628427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410118347517968