Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq42510 113 4e-20
seq39797 113 4e-20
seq33539 113 4e-20
seq44074 111 1e-19
seq17706 96.9 3e-15
seq44363 89.7 4e-13
seq43693 86.0 5e-12
seq36884 82.4 6e-11
>seq42510
Length=1301382
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 87354 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 87295
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
| || ||| | | || | ||| || || ||||| ||||| | || |||
Sbjct 87294 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 87235
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| ||||| ||| |||||||| ||| || | || |||
Sbjct 87234 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 87175
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|||||||||||||| ||||||||||| | |||||
Sbjct 87174 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 87140
>seq39797
Length=2305578
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 1756923 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 1756982
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
| || ||| | | || | ||| || || ||||| ||||| | || |||
Sbjct 1756983 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1757042
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| ||||| ||| |||||||| ||| || | || |||
Sbjct 1757043 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1757102
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|||||||||||||| ||||||||||| | |||||
Sbjct 1757103 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 1757137
>seq33539
Length=658333
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | ||||| | || || || ||||| ||| ||| ||||||
Sbjct 236825 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 236766
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
|||| ||| | | || | ||| || || ||||| ||||| | || |||
Sbjct 236765 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 236706
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| ||||| ||| |||||||| ||| || | || |||
Sbjct 236705 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 236646
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|||||||||||||| ||||||||||| | |||||
Sbjct 236645 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 236611
>seq44074
Length=2336235
Score = 111 bits (122), Expect = 1e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | ||||| | ||||| || ||||| || ||| |||| |
Sbjct 1652955 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACTC 1652896
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
|||| ||| | | || | ||| || || ||||| ||||| | || |||
Sbjct 1652895 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1652836
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| ||||| ||| |||||||| | ||| || | || |||
Sbjct 1652835 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGAGTAC 1652776
Query 25212 AATATTCAAAAGGAATCTACTCTTCA 25237
|||||||||||||| |||||||||||
Sbjct 1652775 AATATTCAAAAGGAGTCTACTCTTCA 1652750
>seq17706
Length=950375
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/215 (70%), Gaps = 1/215 (0%)
Strand=Plus/Minus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | ||||| | | ||| || ||||| ||| ||| ||||||
Sbjct 545298 AAAATGCAGAT-TTCGTGAAAACTCTTATGGGGAAGACCATCACCCTCGAGGTTGAACCC 545240
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
| || | | | | || | ||| || || ||||| ||||| | || |||
Sbjct 545239 TCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 545180
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| |||||||| |||||||| ||||| ||| |||||| | ||| || | || |||
Sbjct 545179 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGGTGGACGTACTTTGTCTGACTAC 545120
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|||||||||||||| ||||||||||| | |||||
Sbjct 545119 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 545085
>seq44363
Length=166659
Score = 89.7 bits (98), Expect = 4e-13
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209
|||| |||||||| |||||||| ||||| ||| |||||||| ||| || | || |
Sbjct 137981 ATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACT 138040
Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|||||||||||||||| ||||||||||| | |||||
Sbjct 138041 ACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 138077
>seq43693
Length=2839110
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/119 (75%), Gaps = 11/119 (9%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||| ||||| || || ||||| |||||||| |||||||| ||||| |||||||||
Sbjct 374632 GATAAGGAAGGAGTTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAATTGGAA 374691
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
| ||| | || ||||| ||||||||||| ||||||||||| | |||||
Sbjct 374692 G-----------ATGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 374739
>seq36884
Length=899181
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | | ||| | || || || ||||| ||| ||| ||||||
Sbjct 628641 AAAATGCAGATTTTCGTGATAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 628582
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
|||| || | | || | || || || | ||| ||||| | || | |
Sbjct 628581 TCAGACACAATAGAAAATGTATAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCTGGT 628522
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| || ||||| |||||||| ||||| ||| |||||||| ||| || | || |||
Sbjct 628521 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 628462
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
||||||||||| || ||||||||||| | |||||
Sbjct 628461 AATATTCAAAAAGAGTCTACTCTTCATTTTGTGTT 628427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410118347517968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |