Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq44056 98.7 1e-15
seq33539 95.1 2e-14
seq52973 87.8 3e-12
seq42510 86.0 9e-12
seq39797 86.0 9e-12
>seq44056
Length=626226
Score = 98.7 bits (108), Expect = 1e-15
Identities = 161/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| ||||||| | || |||||||| || || | ||| | || | | |
Sbjct 245013 ATGCAGATCTTTGTAAAGACCCACACGGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 244954
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| || | ||| ||||||||||| || || ||||| |||||||| ||
Sbjct 244953 GACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 244894
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || || ||||| || ||||| | || ||| | || || | ||| || ||
Sbjct 244893 CAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAAC 244834
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
|| || ||||| || || |||| |||| || || | |||||||| ||||
Sbjct 244833 ATCCACAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCATTA 244782
>seq33539
Length=658333
Score = 95.1 bits (104), Expect = 2e-14
Identities = 163/237 (69%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | || || || ||||| || || || || | ||| ||||| |
Sbjct 236823 AATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCCTC 236764
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| || ||| |||| || || || ||||| ||||| || || ||||||||
Sbjct 236763 AGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 236704
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||||| || || ||||| || || ||| | || ||| | || || || || || ||
Sbjct 236703 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 236644
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
||||||||| || || ||| | ||| | || || | | || |||||| |||| ||
Sbjct 236643 TATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGTTAAGAA 236587
>seq52973
Length=211
Score = 87.8 bits (96), Expect = 3e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 124545 ATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAATGATAC 124603
||||| | ||||| || ||||| || ||||| || | ||| | || ||| || ||
Sbjct 1 ATATTCGTCAAGACCCTCACAGGAAAGACTATTACCTTGGAGGTGGAGAGCTCG-GACAC 59
Query 124604 AATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAG 124663
||| ||| | || || || |||||||| || ||||| |||||||| || || ||
Sbjct 60 CATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAGCAGAG 119
Query 124664 GCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCA 124723
| | || ||||| || || || | |||||| | ||||| | | || ||||| |||||
Sbjct 120 GTTGATCTTTGCTGGTAAGCAGCTGGAGGATGGACGAACGCTTGCTGACTATAACATTCA 179
Query 124724 AAAAGAATCAAC 124735
||||||||| ||
Sbjct 180 AAAAGAATCCAC 191
>seq42510
Length=1301382
Score = 86.0 bits (94), Expect = 9e-12
Identities = 161/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | || || || || || || || || || | ||| ||||| |
Sbjct 87352 AATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTC 87293
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| || ||| |||| || || || ||||| ||||| || || ||||||||
Sbjct 87292 GGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 87233
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||||| || || ||||| || || ||| | || ||| | || || || || || ||
Sbjct 87232 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 87173
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
||||||||| || || ||| | ||| | || || | | || |||||| ||| ||
Sbjct 87172 TATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAA 87116
>seq39797
Length=2305578
Score = 86.0 bits (94), Expect = 9e-12
Identities = 161/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | || || || || || || || || || | ||| ||||| |
Sbjct 1756925 AATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTC 1756984
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| || ||| |||| || || || ||||| ||||| || || ||||||||
Sbjct 1756985 GGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 1757044
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||||| || || ||||| || || ||| | || ||| | || || || || || ||
Sbjct 1757045 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 1757104
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
||||||||| || || ||| | ||| | || || | | || |||||| ||| ||
Sbjct 1757105 TATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAA 1757161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 754176333081600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |