Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq44056 123 3e-23
seq42152 114 1e-20
seq44178 104 3e-17
seq11730 104 3e-17
seq3029 104 3e-17
seq32039 100 3e-16
seq40750 98.7 1e-15
seq21918 98.7 1e-15
seq43203 96.9 4e-15
seq41127 96.9 4e-15
seq43179 95.1 1e-14
seq43788 93.3 5e-14
seq42477 89.7 6e-13
seq42510 84.2 2e-11
seq39797 84.2 2e-11
>seq44056
Length=626226
Score = 123 bits (136), Expect = 3e-23
Identities = 161/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||||||||| |||| ||| ||| || || || ||||| || | ||||| || |
Sbjct 244799 CGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 244858
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||||| || || || ||||| || ||||||||||| | || | | |||||||
Sbjct 244859 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 244918
Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
| | ||| |||| | ||||| || | | ||||| || | || || || | |||||
Sbjct 244919 T-CTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 244977
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187
|||||||||||| | |||||||||||||| ||||| |||
Sbjct 244978 GGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATGTTT 245017
>seq42152
Length=979470
Score = 114 bits (126), Expect = 1e-20
Identities = 165/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||||| |||| |||| || |||||| || || ||||| ||||
Sbjct 315742 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315801
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || || |||||||| || || || ||||| | ||||||||||| ||
Sbjct 315802 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 315861
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || ||||| ||| |||||| || | | | | ||||| || | |||||
Sbjct 315862 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 315921
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189
|| | |||||||| ||||| || || ||||| || ||||| |||||||| ||
Sbjct 315922 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 315974
Score = 104 bits (114), Expect = 3e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||||| |||| |||| || |||||| || || ||||| ||||
Sbjct 315514 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315573
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || || |||||||| || || || ||||| | ||||||||||| ||
Sbjct 315574 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 315633
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || ||||| ||| |||||| || | | | | ||||| || | |||||
Sbjct 315634 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 315693
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | ||||| || ||||| || || ||||| || ||||| |||||
Sbjct 315694 TCCAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315740
Score = 86.0 bits (94), Expect = 7e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| |||| |||| || |||||| || || ||||| |||| ||||| || |
Sbjct 315298 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 315357
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || || || ||||| | ||||||||||| || | || || ||
Sbjct 315358 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 315417
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
|| ||| || || | | | | ||||| || | ||||| || | ||||||
Sbjct 315418 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 315477
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| || || ||||| || ||||| |||||
Sbjct 315478 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315512
>seq44178
Length=3241816
Score = 104 bits (114), Expect = 3e-17
Identities = 136/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065
|||| || | ||||| || | || || ||||| || || || ||||| || |||||||
Sbjct 924533 TGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCT 924592
Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCG 43124
|||| | || | | |||||||| | ||| |||| | ||||| || | | |||||
Sbjct 924593 GGTCAGGTGGGATACCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCA 924651
Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|| | || || || | ||||||||||||||||| || ||||| |||||||| |||||
Sbjct 924652 CTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 924711
Query 43185 TTTACG 43190
||| ||
Sbjct 924712 TTTGCG 924717
>seq11730
Length=1413057
Score = 104 bits (114), Expect = 3e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 889447 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 889506
Query 60125 ATACTACCGAGGATTGA 60141
|||||| |||||| |||
Sbjct 889507 ATACTAACGAGGAGTGA 889523
>seq3029
Length=1403100
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 553643 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 553702
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 553703 TACTAACGAGGA 553714
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 440268 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 440209
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 440208 TACTAACGAGGA 440197
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | |||||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 461810 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 461751
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 461750 ACTATACTAACGAGGA 461735
>seq32039
Length=61487
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 37637 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 37696
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 37697 ATACTAACGAGGA 37709
>seq40750
Length=7700815
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1846268 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1846327
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1846328 TACTAACGAGGA 1846339
>seq21918
Length=9848887
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 7783047 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7783106
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 7783107 TACTAACGAGGA 7783118
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 7786673 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7786732
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 7786733 TACTAACGAGGA 7786744
>seq43203
Length=1387722
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||| |||| ||| || ||||| || ||||| || | ||||| | | || ||
Sbjct 881602 ACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGAGGCCATCCTCC 881661
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
|||||||| ||||| ||||| || ||||||||||| | || | | |||||||| | ||
Sbjct 881662 AGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT-CTTG 881720
Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| |||| | ||||| || | |||| || | || || || | |||||||| ||
Sbjct 881721 AATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTCTT 881780
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||| || ||||| ||||||| |||||
Sbjct 881781 GCCCGTGAGGGTCTTCACAAAGAGCTGCAT 881810
>seq41127
Length=7874669
Score = 96.9 bits (106), Expect = 4e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||||||||| |||| ||| ||| || || || ||||| || | ||||| || |
Sbjct 7357814 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 7357873
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||||| || ||||| ||||| || ||| |||||| | || | | |||||||
Sbjct 7357874 TCTTCCAGCTGTTTGCCAGCAAATATCAGATGCTACTGGTCAGGTGGGATACCCTCCTTG 7357933
Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
| ||| ||| | |||| || | | ||||| || | || || || | | |||
Sbjct 7357934 TGT-TGAACTTTGGCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGGGAT 7357992
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187
||||||||| || || ||||| |||||||| ||||| |||
Sbjct 7357993 GGTTTTGCCTGTGAGGGTCTTCACAAAGATCTGCATGTTT 7358032
>seq43179
Length=1133
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 490 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGCGACAGGCGGGGATACTCACCACTA 431
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 430 TACTAACGAGGA 419
>seq43788
Length=1848451
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1321088 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1321147
Query 60125 ATACTACCGAGGATTG 60140
|||||| |||||| ||
Sbjct 1321148 ATACTAACGAGGAGTG 1321163
>seq42477
Length=2619879
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||||| |||||||||||||||||||||||| | |||||||| | ||| |||||||||
Sbjct 2238703 CTCCTCATCAGGGAATCGAACCCTGGTCTCCCACATGACAGGCAGGGATATTCACCACTA 2238644
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 2238643 TACTAACGAGGA 2238632
>seq42510
Length=1301382
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||| | ||| | || |||||||||||||||||| |||| || ||| || | ||
Sbjct 87139 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 87198
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|| || ||||| ||||| || || |||| ||||| || | || | | ||||| ||
Sbjct 87199 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 87258
Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150
| ||| || || | | | | ||| || | ||| || |||| ||||||||
Sbjct 87259 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 87318
Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| ||||| || || || || || || ||||||||
Sbjct 87319 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 87354
>seq39797
Length=2305578
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||| | ||| | || |||||||||||||||||| |||| || ||| || | ||
Sbjct 1757138 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 1757079
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|| || ||||| ||||| || || |||| ||||| || | || | | ||||| ||
Sbjct 1757078 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1757019
Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150
| ||| || || | | | | ||| || | ||| || |||| ||||||||
Sbjct 1757018 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 1756959
Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| ||||| || || || || || || ||||||||
Sbjct 1756958 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 1756923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570848998167360
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