Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq42510 102 1e-16
seq39797 102 1e-16
seq33539 102 1e-16
seq44074 93.3 6e-14
seq38975 93.3 6e-14
seq36884 93.3 6e-14
seq17706 93.3 6e-14
seq40764 86.0 9e-12
seq44363 84.2 3e-11
>seq42510
Length=1301382
Score = 102 bits (112), Expect = 1e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || ||
Sbjct 87125 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 87183
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||
Sbjct 87184 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 87243
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 87244 AATTCCTTCCTTATCCTG 87261
>seq39797
Length=2305578
Score = 102 bits (112), Expect = 1e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || ||
Sbjct 1757152 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 1757094
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||
Sbjct 1757093 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 1757034
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 1757033 AATTCCTTCCTTATCCTG 1757016
>seq33539
Length=658333
Score = 102 bits (112), Expect = 1e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || ||
Sbjct 236596 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 236654
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||
Sbjct 236655 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 236714
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 236715 AATTCCTTCCTTATCCTG 236732
>seq44074
Length=2336235
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || | | ||| | |||||| || ||| || ||||| || || ||
Sbjct 1652726 CCACCACGAAGTCTCAACGCAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTACTCAGA 1652784
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | ||| || | ||| || |||||||| |||| |||||||||||| |||||
Sbjct 1652785 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 1652844
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 1652845 AATTCCTTCCTTATCCTG 1652862
>seq38975
Length=485
Score = 93.3 bits (102), Expect = 6e-14
Identities = 154/228 (68%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | ||| | | ||||| || || || ||||| ||| || || || ||||| ||
Sbjct 373 CCACCACGAAGACGGAGCACCAAGTGCAATGTCGATTCCTTTTGA-ATGTTGTAATCCGA 315
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||| ||||||| || || || || ||||||||||| ||||||| ||| || || || ||
Sbjct 314 AAGGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGGTCGGGTGG 255
Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229
|| || || |||||||| ||||||||| ||||||
Sbjct 254 GATACCCTCCTTATCTTGGATCTTCGCCTTAACGTTATCAATAGTATCTGATGATTCTAC 195
Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| ||| || || || || || || || || | ||| || |||||
Sbjct 194 TTCTAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 147
>seq36884
Length=899181
Score = 93.3 bits (102), Expect = 6e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 146052 CACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAA 146111
|||| | |||||| || || ||||| | |||||| ||||| ||||| || || || |
Sbjct 628413 CACCACGAAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACA 628472
Query 146112 GAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAA 146171
||| | | ||| || | ||| || |||||||| |||| ||| |||||| | |||||||
Sbjct 628473 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACCAGGAGGAA 628532
Query 146172 TTCCTTCTTTA 146182
||||||| |||
Sbjct 628533 TTCCTTCCTTA 628543
>seq17706
Length=950375
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| |||||| || || | ||| | |||||| || ||| || ||||| || || ||
Sbjct 545070 CCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 545128
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | | | || | ||| || |||||||| |||| |||||||||||| |||||
Sbjct 545129 CAAAGTACGTCCACCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 545188
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 545189 AATTCCTTCCTTATCCTG 545206
>seq40764
Length=2310167
Score = 86.0 bits (94), Expect = 9e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496
|| ||||||| || | ||| ||| | |||| || ||| ||| | ||||||||| |
Sbjct 1970889 GGGTGTTATGGAAAAGTAGTTCCATGGTCTGGCTTGGCTGCAAAACACTTTATTGATGTA 1970830
Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAAT 10553
|||||||| || || |||||| |||||||||||||||| || || || | ||||||
Sbjct 1970829 GGAGCTGGTGTCATAGACGAAAATTATAGAGGAAATGTTGGTGTTGTACTGTTTAAT 1970773
>seq44363
Length=166659
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/138 (75%), Gaps = 6/138 (4%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || ||
Sbjct 138092 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 138034
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| || |||||||| |||| ||||||||||| |||
Sbjct 138033 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGAT----AGG 137978
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| || || ||
Sbjct 137977 AATTCCTTCCTTCTCCTG 137960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 742266940631040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |