Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq42510 102 1e-16 seq39797 102 1e-16 seq33539 102 1e-16 seq44074 93.3 6e-14 seq38975 93.3 6e-14 seq36884 93.3 6e-14 seq17706 93.3 6e-14 seq40764 86.0 9e-12 seq44363 84.2 3e-11 >seq42510 Length=1301382 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 87125 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 87183 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 87184 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 87243 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 87244 AATTCCTTCCTTATCCTG 87261 >seq39797 Length=2305578 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 1757152 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 1757094 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 1757093 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 1757034 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 1757033 AATTCCTTCCTTATCCTG 1757016 >seq33539 Length=658333 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 236596 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 236654 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 236655 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 236714 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 236715 AATTCCTTCCTTATCCTG 236732 >seq44074 Length=2336235 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || | | ||| | |||||| || ||| || ||||| || || || Sbjct 1652726 CCACCACGAAGTCTCAACGCAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTACTCAGA 1652784 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 1652785 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 1652844 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 1652845 AATTCCTTCCTTATCCTG 1652862 >seq38975 Length=485 Score = 93.3 bits (102), Expect = 6e-14 Identities = 154/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | | ||||| || || || ||||| ||| || || || ||||| || Sbjct 373 CCACCACGAAGACGGAGCACCAAGTGCAATGTCGATTCCTTTTGA-ATGTTGTAATCCGA 315 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||||||| || || || || ||||||||||| ||||||| ||| || || || || Sbjct 314 AAGGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGGTCGGGTGG 255 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 || || || |||||||| ||||||||| |||||| Sbjct 254 GATACCCTCCTTATCTTGGATCTTCGCCTTAACGTTATCAATAGTATCTGATGATTCTAC 195 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| ||| || || || || || || || || | ||| || ||||| Sbjct 194 TTCTAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 147 >seq36884 Length=899181 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 146052 CACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAA 146111 |||| | |||||| || || ||||| | |||||| ||||| ||||| || || || | Sbjct 628413 CACCACGAAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACA 628472 Query 146112 GAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAA 146171 ||| | | ||| || | ||| || |||||||| |||| ||| |||||| | ||||||| Sbjct 628473 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACCAGGAGGAA 628532 Query 146172 TTCCTTCTTTA 146182 ||||||| ||| Sbjct 628533 TTCCTTCCTTA 628543 >seq17706 Length=950375 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 545070 CCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 545128 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | | | || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 545129 CAAAGTACGTCCACCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 545188 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 545189 AATTCCTTCCTTATCCTG 545206 >seq40764 Length=2310167 Score = 86.0 bits (94), Expect = 9e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| || | ||| ||| | |||| || ||| ||| | ||||||||| | Sbjct 1970889 GGGTGTTATGGAAAAGTAGTTCCATGGTCTGGCTTGGCTGCAAAACACTTTATTGATGTA 1970830 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAAT 10553 |||||||| || || |||||| |||||||||||||||| || || || | |||||| Sbjct 1970829 GGAGCTGGTGTCATAGACGAAAATTATAGAGGAAATGTTGGTGTTGTACTGTTTAAT 1970773 >seq44363 Length=166659 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 138092 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 138034 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||||||||||| ||| Sbjct 138033 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGAT----AGG 137978 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || || || Sbjct 137977 AATTCCTTCCTTCTCCTG 137960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742266940631040