Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq83510 118 7e-22 seq42152 113 3e-20 seq21918 107 1e-18 seq44056 98.7 6e-16 seq41127 95.1 8e-15 seq68558 93.3 3e-14 seq44178 86.0 4e-12 seq37440 86.0 4e-12 >seq83510 Length=277 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||||| |||||||||||| | || |||||||| ||||||||||| || Sbjct 232 CCACCACGCAGCCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 173 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || || ||||||||||| || Sbjct 172 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGGA 113 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | || | ||||| | ||||| Sbjct 112 ATACCTTCCTTGTCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGACC 53 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| || || || || |||||||| |||||||||||| Sbjct 52 TCAAGGGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCATC 5 >seq42152 Length=979470 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || || ||||| ||||||||||| || Sbjct 315286 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315345 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| ||| Sbjct 315346 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 315405 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || || || ||||| ||| | || | || | || | | || || Sbjct 315406 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 315465 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || || ||||| ||||||||||| Sbjct 315466 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315512 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || || ||||| ||||||||||| || Sbjct 315514 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315573 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| ||| Sbjct 315574 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 315633 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || ||||| || || ||||| ||| | || | || | || | | || | Sbjct 315634 ATGCCTTCCTTATC--CTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 315691 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||| || |||||||| || || ||||| ||||||||||| Sbjct 315692 CCTCCAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315740 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || || ||||| ||||||||||| || Sbjct 315742 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315801 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| ||| Sbjct 315802 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 315861 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || ||||| || || ||||| ||| | || | || | || | | || | Sbjct 315862 ATGCCTTCCTTATC--CTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 315919 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||||| |||||||| || || ||||| ||||||||||| Sbjct 315920 CCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315968 >seq21918 Length=9848887 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| || || |||||||| ||||||||||| ||||| || | || Sbjct 7768908 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 7768967 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| ||||||||| || | || |||||| || Sbjct 7768968 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCT 7769027 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | || | | || || || | |||||||| Sbjct 7769028 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 7769087 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| ||||| ||||||||||| Sbjct 7769088 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 7769119 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || |||||||| ||||||||||| ||||| || | || Sbjct 7768452 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 7768511 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || | || ||||||||| || | || ||||||||| Sbjct 7768512 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7768571 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | || | | ||||| || | |||||||| Sbjct 7768572 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 7768631 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || ||||| |||||||||||| Sbjct 7768632 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 7768664 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || |||||||| ||||||||||| ||||| || | || Sbjct 7768224 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 7768283 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || | || ||||||||| || | || |||||||| Sbjct 7768284 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 7768343 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | || | | ||||| || | |||||||| Sbjct 7768344 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 7768403 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || ||||| |||||||||||| Sbjct 7768404 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 7768436 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || |||||||| ||||||||||| ||||| || | || Sbjct 7768680 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 7768739 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || | || ||||||||| || | || ||||| || Sbjct 7768740 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 7768799 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | || | | ||||| || | |||||||| Sbjct 7768800 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 7768859 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || ||||| |||||||||||| Sbjct 7768860 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 7768892 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||| ||| | ||| |||||||| ||||||||||| ||||| || | || Sbjct 7767995 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 7768054 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| || || || || || | || ||||||||| || | || ||||| || Sbjct 7768055 TTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATC 7768114 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 |||||| ||| | || | || | ||| | | ||||| || | |||||||| Sbjct 7768115 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGT 7768174 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || ||||| |||||||||||| Sbjct 7768175 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 7768208 >seq44056 Length=626226 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||||||| | || ||||| || ||||||||||| || Sbjct 244787 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAG 244846 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||| ||||| || || || || ||||||||||| || Sbjct 244847 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 244906 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| || ||| ||||| | | | || | || | | ||||| Sbjct 244907 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 244965 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||||| ||| | || || |||||||||||||| Sbjct 244966 CTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCAT 245013 >seq41127 Length=7874669 Score = 95.1 bits (104), Expect = 8e-15 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 34170 GCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGAC 34229 |||| | || ||||||||| | || |||||||| ||||||||||| || || | Sbjct 7357809 GCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGC 7357868 Query 34230 GGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCT 34289 || | || |||| ||| ||||| || || || || ||| |||||| || | | || Sbjct 7357869 GGCCATCTTCCAGCTGTTTGCCAGCAAATATCAGATGCTACTGGTCAGGTGGGATACCCT 7357928 Query 34290 CCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348 |||||| | | |||| ||||| || | || | || | | ||||| || | Sbjct 7357929 CCTTGT-GTTGAACTTTGGCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGG 7357987 Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||||||||||| ||||| || ||||||||||||||||| Sbjct 7357988 GGGATGGTTTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7358028 >seq68558 Length=238 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || |||| |||| |||| |||||| || ||||| Sbjct 234 TCCTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCCTCCAGCTGCTTTCCGGCGAAG 175 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | |||||||| || ||| | | |||||||| ||||| ||| | | | Sbjct 174 ATCAAACGCTGCTGATCCGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 115 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || || | |||||||| ||||| ||||| ||||| || Sbjct 114 TCGATGGTGTCGGAGCTCTCCACCTCTAGGGTGATGGTCTTGCCCGTGAGGGTTTTGACG 55 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 54 AAGATCTGCAT 44 >seq44178 Length=3241816 Score = 86.0 bits (94), Expect = 4e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 ||||||| || || ||| | || |||| ||| ||||| || || || || ||||||| Sbjct 924533 TGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCT 924592 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCG 34330 |||| || | | ||||||||| || ||| ||||| | || | || | || Sbjct 924593 GGTCAGGTGGGATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCA 924651 Query 34331 GTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | | ||||| || | |||||||||||||| ||||| || ||||||||||||||||| Sbjct 924652 CTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 924710 >seq37440 Length=3232823 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||||||||| | || |||| ||| ||||| ||||| || Sbjct 1723546 CCACCTCACAGACGCAGCACCAGGTGCAGGGTGGACTCTTCCTGGATGTTCTAGTCTGAG 1723487 Query 34223 AG-CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 || ||| | | | || ||| ||| ||||| || || || || | ||||||||| | | | Sbjct 1723486 AGACTG-CAGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAG 1723428 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339 | | || ||||||||| || || ||||| | || | | | || || | || Sbjct 1723427 G-ATGCCCTCCTTGTCTTGGAT-TTCGGCTTTGACATTCTCAGTGGTGTCAGTGGCCTCC 1723370 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || || | |||||||| ||||| |||| || |||||||||||||||||| || Sbjct 1723369 ACCTCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCATCTCT 1723316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322538429630720