Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9420 269 2e-67 seq43468 111 1e-19 seq30183 104 2e-17 seq37045 98.7 9e-16 >seq9420 Length=356144 Score = 269 bits (298), Expect = 2e-67 Identities = 615/916 (67%), Gaps = 16/916 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| ||| ||| || | |||||| ||| ||| Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || || |||||||| |||||||| || || |||| | ||||||||| | Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 52661 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACA-ATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||||| ||||| || || | | | | | || || | |||| ||||| || Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAA-CCCAGTTCCAGCATG 52720 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 ||| || |||||||| || || || || ||||||| | || ||||| || || Sbjct 52721 --TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGC 52778 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 || ||||| | || || || | || | | |||||| ||| || | || ||||| Sbjct 52779 TTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATT 52838 Query 16184 TCTCTTACTACACTATTTAAC-GGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAA 16242 ||||||||| | ||| | | || || || | |||||| ||||| | |||||||| Sbjct 52839 TCTCTTACT-CTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAA 52897 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 |||||| || || || || || || || || | || || |||||||| || || ||||| Sbjct 52898 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 52957 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 ||||||||||| || | ||| ||||| | ||||| ||||||||||| || ||||| Sbjct 52958 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTC 53014 Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattt 16422 |||| ||||| | || | || ||||| || || | ||| | ||||| | Sbjct 53015 CGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTG 53074 Query 16423 tttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 ||||||| ||| || | || ||||| ||| | || | ||||| | | | | Sbjct 53075 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAA 53134 Query 16483 AtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATG 16542 | |||||||| |||| || ||||| || || || |||||||||||||| ||||| Sbjct 53135 TTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATG 53194 Query 16543 AATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || || || || ||| | || || | ||||| | || || ||||| Sbjct 53195 TATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTC 53254 Query 16603 AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 | ||| | || | |||||||| || ||||| ||||| || |||||||| || | Sbjct 53255 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAAC 53314 Query 16663 AAGTATGTGTTTAATAAAAtttttttCGTT-ATCTGAAAGTTTTAACCAGTCAGAAAAAT 16721 || | || ||||||| | | || || || | | || ||||| ||| | Sbjct 53315 CAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATT-CCCAGTGCCAAATGT 53373 Query 16722 CTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTT 16781 | || || | || ||||| || | ||||| || ||||| | ||||| |||||||| | Sbjct 53374 CCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCT 53433 Query 16782 TCCATATGTCTTCGTA 16797 ||| || || | ||| Sbjct 53434 GCCAGATATCATGGTA 53449 >seq43468 Length=1795776 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| | | | || |||||||| | Sbjct 1453505 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 1453446 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 1453445 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 1453386 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 1453385 CCATAAAATCAAAAGGATTTTCTG 1453362 >seq30183 Length=85853 Score = 104 bits (114), Expect = 2e-17 Identities = 302/459 (66%), Gaps = 11/459 (2%) Strand=Plus/Plus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||||| | ||| || || || || || || || || | || || |||||||| || Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| ||||||||||| || | ||| ||||| ||||| |||||||||||| | Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562 Query 16355 ATACCTTCAACTGCGGCAAA---TGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 | | ||| ||| |||||| |||||| || || || | || | ||| | Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACAT---TCTCCATGGGTAACGTCTTTGTTC 31619 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471 | ||||| | ||||| ||| || | || |||||| ||| | || || ||| Sbjct 31620 CCAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACAG-GCATTGTTTCAATGGCA 31678 Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 || || | | | | |||||||| ||||| ||| | || || || || | | ||| Sbjct 31679 TTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGATTATTT 31736 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 || || ||||| | || || | || | || || ||||| ||||| | ||| | Sbjct 31737 ATGTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTA 31796 Query 16592 ATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 || || | ||| ||| ||| ||| | |||||||| | ||||| ||||| | || Sbjct 31797 ATCTGAATTTCTTGAG-CAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGC 31855 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC 16689 |||||| || || || || | ||||||| | |||| Sbjct 31856 TGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTC 31894 >seq37045 Length=3135053 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 1579224 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1579283 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 1579284 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 1579343 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 1579344 ACAACACGTTCACC 1579357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461728550923200