Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 269 2e-67
seq43468 111 1e-19
seq30183 104 2e-17
seq37045 98.7 9e-16
>seq9420
Length=356144
Score = 269 bits (298), Expect = 2e-67
Identities = 615/916 (67%), Gaps = 16/916 (2%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||| || ||| ||| | | ||| ||| ||| || | |||||| ||| |||
Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
| ||||| || || |||||||| |||||||| || || |||| | ||||||||| |
Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 52661
Query 16005 CCATAAAATCAAAAGGATTTTTTGAACA-ATAGTATTTATCGCATCCCAATTCCAACAAT 16063
||||||| ||||| || || | | | | | || || | |||| ||||| ||
Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAA-CCCAGTTCCAGCATG 52720
Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123
||| || |||||||| || || || || ||||||| | || ||||| || ||
Sbjct 52721 --TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGC 52778
Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183
|| ||||| | || || || | || | | |||||| ||| || | || |||||
Sbjct 52779 TTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATT 52838
Query 16184 TCTCTTACTACACTATTTAAC-GGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAA 16242
||||||||| | ||| | | || || || | |||||| ||||| | ||||||||
Sbjct 52839 TCTCTTACT-CTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAA 52897
Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302
|||||| || || || || || || || || | || || |||||||| || || |||||
Sbjct 52898 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 52957
Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362
||||||||||| || | ||| ||||| | ||||| ||||||||||| || |||||
Sbjct 52958 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTC 53014
Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattt 16422
|||| ||||| | || | || ||||| || || | ||| | ||||| |
Sbjct 53015 CGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTG 53074
Query 16423 tttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482
||||||| ||| || | || ||||| ||| | || | ||||| | | | |
Sbjct 53075 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAA 53134
Query 16483 AtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATG 16542
| |||||||| |||| || ||||| || || || |||||||||||||| |||||
Sbjct 53135 TTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATG 53194
Query 16543 AATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
|| ||||| || || || || || ||| | || || | ||||| | || || |||||
Sbjct 53195 TATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTC 53254
Query 16603 AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662
| ||| | || | |||||||| || ||||| ||||| || |||||||| || |
Sbjct 53255 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAAC 53314
Query 16663 AAGTATGTGTTTAATAAAAtttttttCGTT-ATCTGAAAGTTTTAACCAGTCAGAAAAAT 16721
|| | || ||||||| | | || || || | | || ||||| ||| |
Sbjct 53315 CAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATT-CCCAGTGCCAAATGT 53373
Query 16722 CTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTT 16781
| || || | || ||||| || | ||||| || ||||| | ||||| |||||||| |
Sbjct 53374 CCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCT 53433
Query 16782 TCCATATGTCTTCGTA 16797
||| || || | |||
Sbjct 53434 GCCAGATATCATGGTA 53449
>seq43468
Length=1795776
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || || |||||| | | | || |||||||| |
Sbjct 1453505 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 1453446
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct 1453445 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 1453386
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||||||||||| ||
Sbjct 1453385 CCATAAAATCAAAAGGATTTTCTG 1453362
>seq30183
Length=85853
Score = 104 bits (114), Expect = 2e-17
Identities = 302/459 (66%), Gaps = 11/459 (2%)
Strand=Plus/Plus
Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294
||||||| | ||| || || || || || || || || | || || |||||||| ||
Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502
Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354
|| ||||| ||||||||||| || | ||| ||||| ||||| |||||||||||| |
Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562
Query 16355 ATACCTTCAACTGCGGCAAA---TGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411
| | ||| ||| |||||| |||||| || || || | || | ||| |
Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACAT---TCTCCATGGGTAACGTCTTTGTTC 31619
Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471
| ||||| | ||||| ||| || | || |||||| ||| | || || |||
Sbjct 31620 CCAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACAG-GCATTGTTTCAATGGCA 31678
Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531
|| || | | | | |||||||| ||||| ||| | || || || || | | |||
Sbjct 31679 TTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGATTATTT 31736
Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591
|| || ||||| | || || | || | || || ||||| ||||| | ||| |
Sbjct 31737 ATGTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTA 31796
Query 16592 ATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650
|| || | ||| ||| ||| ||| | |||||||| | ||||| ||||| | ||
Sbjct 31797 ATCTGAATTTCTTGAG-CAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGC 31855
Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC 16689
|||||| || || || || | ||||||| | ||||
Sbjct 31856 TGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTC 31894
>seq37045
Length=3135053
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || |||||||| || || ||||| ||||||||||| ||
Sbjct 1579224 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1579283
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| ||
Sbjct 1579284 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 1579343
Query 16379 ACCAATCGCTCACC 16392
|| | || |||||
Sbjct 1579344 ACAACACGTTCACC 1579357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461728550923200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |