Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq30277 1494 0.0
seq42477 132 3e-26
>seq30277
Length=7153799
Score = 1494 bits (1656), Expect = 0.0
Identities = 1286/1587 (81%), Gaps = 37/1587 (2%)
Strand=Plus/Minus
Query 107194 CATCACTCTGGAGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATT 107247
||||| | |||| |||||||||||||| |||| |||||||||||| | |||||||
Sbjct 3731032 CATCAGTTTGGAATTGAACTTGATGTTTCTGGGAATGATTAGTTTGTAACTGGAGGCATT 3730973
Query 107248 TTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATC 107303
|||||||||| |||||| |||||||| |||| ||||||| ||| ||| |||| ||
Sbjct 3730972 TTGTTCTGTCGAAGGATTGTGTCCTCCTCTTCCTTCCCTGTGCTCAATCTCCACCTG-TC 3730914
Query 107304 TCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGG 107363
| || | || ||| |||| | ||||||| || || |||| | ||| | |||||
Sbjct 3730913 TACCCTTCCGTGACAATGGTTCAATGGAAGA-GA--CTCTGCCAGCAGCATTACTTGTGG 3730857
Query 107364 GCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAA 107423
||||||||||||||||||||||||| | ||| |||||| |||||| | ||||| ||
Sbjct 3730856 GCCCTGGGCTGCTATATGCTGCTGGTCACTGTGGCTCTGAAACTTTCTTTAAGGTTGAAG 3730797
Query 107424 TGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGAC 107483
|||| || ||||| |||| |||||||||| || || || ||| |||||||| |
Sbjct 3730796 TGTGGCTCTGACCACTTGGGTCTGCAGTCCAGGGAATTTCAAAGCCAGTACTGTAGGAAT 3730737
Query 107484 ATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACG 107543
|| ||||| ||| |||||| |||||||||||||| || ||||||||||| ||| ||||
Sbjct 3730736 ATCTTGTATAATTCCCTGAAACTGCCAGCAAAGAGGTCTATCAACTGTTCAGGGGTCACC 3730677
Query 107544 CGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAG 107603
|||||||||| ||||| ||| | || || | || | |||||||| || ||||| |||
Sbjct 3730676 CGAGGGGACCCAGAAGCCGTGTTTCACGCTATTCTGAATAACCTGGAGGTCAAGAAGAAG 3730617
Query 107604 CGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAG 107663
||| |||| | || | |||| | || ||| | | |||||||||||||| |||||||||
Sbjct 3730616 CGGGAGCCTTTTACAGACACCCACTATCTCTCCCTCACCAGAGACTGTGAACGCTTCAAG 3730557
Query 107664 GCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCC 107723
|| |||||||||||||||||||||||||||| ||||||||| | || ||||| |||||
Sbjct 3730556 GCGGAAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCG 3730497
Query 107724 TACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTAT 107783
||||| |||||| | |||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct 3730496 TACTCTATGGTGATTCATGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTAT 3730437
Query 107784 GCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAG 107843
||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||
Sbjct 3730436 GCCCCTCAGAACATATACTGTATCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAG 3730377
Query 107844 GCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCG 107903
|| ||||| || |||||||| |||||||| ||||||||||| ||||||||| |||| | |
Sbjct 3730376 GCAGTCAAAGCAATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGG 3730317
Query 107904 GTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTC 107963
||| |||||||||||||||| || |||||||||||||| ||||| |||||||||||||||
Sbjct 3730316 GTGATTTATGCCTCCTGGTCTAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTC 3730257
Query 107964 CAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAG 108023
|||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||
Sbjct 3730256 CAGAGCTCAGTGCCATGGAAATACTTCCTGAATACATGCGGGACGGACTTTCCTCTAAAG 3730197
Query 108024 ACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCT 108083
| ||||||||||||||||| ||| |||||||||||||| || | ||| || |||||| |
Sbjct 3730196 AGCAATGCCGAGATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGACA 3730137
Query 108084 GAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGAC 108140
||||||||| || || |||| ||| |||||| |||| | || |||| ||| ||||
Sbjct 3730136 GAGGTACCTCCTAAGCACAAACAAACCCGCTGGGAATATCACTTTGAGGTAGTGGGAGAC 3730077
Query 108141 ACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200
||| | ||| |||| ||||| |||||| ||||||||| |||||||| | ||||| |||
Sbjct 3730076 ACATTACACCTAACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACA 3730017
Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260
|||||||| ||| ||||||| || |||| |||||||||||||| || | |||||||||
Sbjct 3730016 GGGAATGCGTATATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAACCCTAAA 3729957
Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320
|||||| |||| |||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 3729956 TCCCAACAACTGATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCC 3729897
Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380
|||||||||||||| | ||||||||||||||||||||| | ||||||||||| |||||
Sbjct 3729896 ACCCTTCAGCGTGCACGGTGGATGCCTGGCTCTGTTCCCAATCACCCCAAGTACGACATC 3729837
Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440
|||||||||||| | || |||||||| |||||||||||| ||| |||||||| ||
Sbjct 3729836 TCAGACATGACTTCTATTGCCAGGCTGGTCAAGTGGCAGGGCCATGAGGGAGACATCGAT 3729777
Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500
| ||| || ||||||| || |||||||||||||| | | |||| ||||| |||| |||
Sbjct 3729776 AAGGGTGCTCCTTATGGCCCTTGCTCTGGAATCCACCAGCGGGCTATCTGTGTTTATGGG 3729717
Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560
|| |||||| || ||||||| || || ||||||||||| ||||| ||||||||||||||
Sbjct 3729716 GCTGGGGACTTGCACTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCA 3729657
Query 108561 AGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620
| ||| |||||||| | || |||||||||||||||||||||||| ||||||||||||||
Sbjct 3729656 AAGGTAGATGATAATGCTCTTCAGTGCTTAGAAGAGTACCTACGTTATAAGGCCATCTAT 3729597
Query 108621 GGGACTGAACTTTGAGCTGCACT-------------------GTGGGCCAGGGACTGTGC 108661
|||||||||||||||| |||| | |||| || | ||| |
Sbjct 3729596 GGGACTGAACTTTGAGACACACTACGGGAGCATTGCTACCTGGGGGGCAAGAGCATGTAC 3729537
Query 108662 CAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCAT 108721
||||||| || | | |||| || ||| ||||||| ||| |||||| || ||| |||
Sbjct 3729536 AAACATGCTCAAAACTTGCTGGGACAGTG-CGGGTGGGAGACTAGGGCTTTGCAATTCAT 3729478
Query 108722 GGCATCCCCCAGGGTCAGAGGGCTGCT 108748
|||||||| |||| | || || |||||
Sbjct 3729477 GGCATCCCTCAGGATAAGGGGTCTGCT 3729451
>seq42477
Length=2619879
Score = 132 bits (146), Expect = 3e-26
Identities = 572/896 (64%), Gaps = 49/896 (5%)
Strand=Plus/Minus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || |||||||||||| ||| || || || || || || || ||||| ||| | |||
Sbjct 693598 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 693539
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||| |||| |||||||| | ||| | ||| |||||||| | || || |
Sbjct 693538 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 693479
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864
|| ||||| || ||| ||| || | | || || || | | ||| ||||
Sbjct 693478 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGACAGGCATCGCTTCC 693422
Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924
|| ||| |||||||| ||||||| |||| ||||||||||| || ||| |
Sbjct 693421 TGTTTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 693362
Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981
| || || |||||||| ||||| ||| | ||| ||| | | | ||||| | |||
Sbjct 693361 CGGGTTCAGGCTGACCTTAACTGCATGAAGGAC---CTCTATGCAATGAGTGCAAACTGG 693305
Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041
|||||||| | ||| || || | || || || || || ||||| || || |||
Sbjct 693304 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTC 693245
Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGAG 108098
| || ||| |||| | ||| | ||||| |||| | ||| | || || |
Sbjct 693244 AGGAAGCTGAAGTTGTTAATGGGAGAAAACAGCCTGGAAACGGAGAGGATGCCATCCCAT 693185
Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGT---------------GACAGACACA 108143
||| || | | |||||| | || |||||||| |||| |||||
Sbjct 693184 ---AAAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCATTAATGGAAAGCTGACAAACACA 693128
Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203
| || ||| ||| ||||| | || | ||| | || | ||
Sbjct 693127 GGG------ACTGTCAAAATGCTT---CCTCCGCTCGAAAC---ACCTCTTTTTTCTGGC 693080
Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCC 108263
| |||||| ||||||| | | ||| | ||| |||| || | || ||| |
Sbjct 693079 AGTGCCTACTTTGTGGTCAGTAGAGAGTATGTGGGGTATGTACTACAGAATGAAAAACTC 693020
Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323
|||| | | || |||| ||||||| || ||||| || || | ||||||||||||
Sbjct 693019 CAAAAGTTTATGGAGTGGGCGCAAGACACATACAGCCCTGATGAGTATCTCTGGGCCACC 692960
Query 108324 CTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCC-AAGTATCACATCT 108381
| ||| | ||| || | | || ||||| || || |||| || ||||| | | |
Sbjct 692959 ATCCAGAGGATTCC-TGAAGTCCCGGGCTCACTTTCT-GCCAGCCATAAGTACGATTTGT 692902
Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441
| |||||| || | |||||| | ||||||||||| ||| ||||| ||||| ||
Sbjct 692901 CTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAATACTTTGAGGGTGATGTTTCCA 692842
Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501
||| || || || | |||||| ||| |||| | | | | ||||||| || |
Sbjct 692841 AGGGTGCCCCCTACCCTCCCTGCGATGGGGTCCACGTGCGCTCGGTGTGCATTTTTGGAG 692782
Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
| || ||| || ||||||| || | ||||| ||| | || || || |||||||||
Sbjct 692781 CTGGTGACTTGAACTGGATGCTGCGCAACCACCACTTGTTTGCCAATAAGTTTGAC 692726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347693615792688
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