Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq30277 1494 0.0 seq42477 132 3e-26 >seq30277 Length=7153799 Score = 1494 bits (1656), Expect = 0.0 Identities = 1286/1587 (81%), Gaps = 37/1587 (2%) Strand=Plus/Minus Query 107194 CATCACTCTGGAGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATT 107247 ||||| | |||| |||||||||||||| |||| |||||||||||| | ||||||| Sbjct 3731032 CATCAGTTTGGAATTGAACTTGATGTTTCTGGGAATGATTAGTTTGTAACTGGAGGCATT 3730973 Query 107248 TTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATC 107303 |||||||||| |||||| |||||||| |||| ||||||| ||| ||| |||| || Sbjct 3730972 TTGTTCTGTCGAAGGATTGTGTCCTCCTCTTCCTTCCCTGTGCTCAATCTCCACCTG-TC 3730914 Query 107304 TCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGG 107363 | || | || ||| |||| | ||||||| || || |||| | ||| | ||||| Sbjct 3730913 TACCCTTCCGTGACAATGGTTCAATGGAAGA-GA--CTCTGCCAGCAGCATTACTTGTGG 3730857 Query 107364 GCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAA 107423 ||||||||||||||||||||||||| | ||| |||||| |||||| | ||||| || Sbjct 3730856 GCCCTGGGCTGCTATATGCTGCTGGTCACTGTGGCTCTGAAACTTTCTTTAAGGTTGAAG 3730797 Query 107424 TGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGAC 107483 |||| || ||||| |||| |||||||||| || || || ||| |||||||| | Sbjct 3730796 TGTGGCTCTGACCACTTGGGTCTGCAGTCCAGGGAATTTCAAAGCCAGTACTGTAGGAAT 3730737 Query 107484 ATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACG 107543 || ||||| ||| |||||| |||||||||||||| || ||||||||||| ||| |||| Sbjct 3730736 ATCTTGTATAATTCCCTGAAACTGCCAGCAAAGAGGTCTATCAACTGTTCAGGGGTCACC 3730677 Query 107544 CGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAG 107603 |||||||||| ||||| ||| | || || | || | |||||||| || ||||| ||| Sbjct 3730676 CGAGGGGACCCAGAAGCCGTGTTTCACGCTATTCTGAATAACCTGGAGGTCAAGAAGAAG 3730617 Query 107604 CGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAG 107663 ||| |||| | || | |||| | || ||| | | |||||||||||||| ||||||||| Sbjct 3730616 CGGGAGCCTTTTACAGACACCCACTATCTCTCCCTCACCAGAGACTGTGAACGCTTCAAG 3730557 Query 107664 GCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCC 107723 || |||||||||||||||||||||||||||| ||||||||| | || ||||| ||||| Sbjct 3730556 GCGGAAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCG 3730497 Query 107724 TACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTAT 107783 ||||| |||||| | |||||||||||||||||||||||| |||| |||||||| |||||| Sbjct 3730496 TACTCTATGGTGATTCATGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTAT 3730437 Query 107784 GCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAG 107843 ||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| Sbjct 3730436 GCCCCTCAGAACATATACTGTATCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAG 3730377 Query 107844 GCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCG 107903 || ||||| || |||||||| |||||||| ||||||||||| ||||||||| |||| | | Sbjct 3730376 GCAGTCAAAGCAATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGG 3730317 Query 107904 GTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTC 107963 ||| |||||||||||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct 3730316 GTGATTTATGCCTCCTGGTCTAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTC 3730257 Query 107964 CAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAG 108023 |||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| Sbjct 3730256 CAGAGCTCAGTGCCATGGAAATACTTCCTGAATACATGCGGGACGGACTTTCCTCTAAAG 3730197 Query 108024 ACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCT 108083 | ||||||||||||||||| ||| |||||||||||||| || | ||| || |||||| | Sbjct 3730196 AGCAATGCCGAGATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGACA 3730137 Query 108084 GAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGAC 108140 ||||||||| || || |||| ||| |||||| |||| | || |||| ||| |||| Sbjct 3730136 GAGGTACCTCCTAAGCACAAACAAACCCGCTGGGAATATCACTTTGAGGTAGTGGGAGAC 3730077 Query 108141 ACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200 ||| | ||| |||| ||||| |||||| ||||||||| |||||||| | ||||| ||| Sbjct 3730076 ACATTACACCTAACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACA 3730017 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 |||||||| ||| ||||||| || |||| |||||||||||||| || | ||||||||| Sbjct 3730016 GGGAATGCGTATATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAACCCTAAA 3729957 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 |||||| |||| |||||||||| ||||||||||||||||| || ||||||||||||||| Sbjct 3729956 TCCCAACAACTGATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCC 3729897 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 |||||||||||||| | ||||||||||||||||||||| | ||||||||||| ||||| Sbjct 3729896 ACCCTTCAGCGTGCACGGTGGATGCCTGGCTCTGTTCCCAATCACCCCAAGTACGACATC 3729837 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 |||||||||||| | || |||||||| |||||||||||| ||| |||||||| || Sbjct 3729836 TCAGACATGACTTCTATTGCCAGGCTGGTCAAGTGGCAGGGCCATGAGGGAGACATCGAT 3729777 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 | ||| || ||||||| || |||||||||||||| | | |||| ||||| |||| ||| Sbjct 3729776 AAGGGTGCTCCTTATGGCCCTTGCTCTGGAATCCACCAGCGGGCTATCTGTGTTTATGGG 3729717 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || |||||| || ||||||| || || ||||||||||| ||||| |||||||||||||| Sbjct 3729716 GCTGGGGACTTGCACTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCA 3729657 Query 108561 AGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 | ||| |||||||| | || |||||||||||||||||||||||| |||||||||||||| Sbjct 3729656 AAGGTAGATGATAATGCTCTTCAGTGCTTAGAAGAGTACCTACGTTATAAGGCCATCTAT 3729597 Query 108621 GGGACTGAACTTTGAGCTGCACT-------------------GTGGGCCAGGGACTGTGC 108661 |||||||||||||||| |||| | |||| || | ||| | Sbjct 3729596 GGGACTGAACTTTGAGACACACTACGGGAGCATTGCTACCTGGGGGGCAAGAGCATGTAC 3729537 Query 108662 CAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCAT 108721 ||||||| || | | |||| || ||| ||||||| ||| |||||| || ||| ||| Sbjct 3729536 AAACATGCTCAAAACTTGCTGGGACAGTG-CGGGTGGGAGACTAGGGCTTTGCAATTCAT 3729478 Query 108722 GGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||||||| |||| | || || ||||| Sbjct 3729477 GGCATCCCTCAGGATAAGGGGTCTGCT 3729451 >seq42477 Length=2619879 Score = 132 bits (146), Expect = 3e-26 Identities = 572/896 (64%), Gaps = 49/896 (5%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 693598 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 693539 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | || || | Sbjct 693538 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 693479 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | | ||| |||| Sbjct 693478 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGACAGGCATCGCTTCC 693422 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 693421 TGTTTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 693362 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | ||| ||| | | | ||||| | ||| Sbjct 693361 CGGGTTCAGGCTGACCTTAACTGCATGAAGGAC---CTCTATGCAATGAGTGCAAACTGG 693305 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || || || || ||||| || || ||| Sbjct 693304 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTC 693245 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGAG 108098 | || ||| |||| | ||| | ||||| |||| | ||| | || || | Sbjct 693244 AGGAAGCTGAAGTTGTTAATGGGAGAAAACAGCCTGGAAACGGAGAGGATGCCATCCCAT 693185 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGT---------------GACAGACACA 108143 ||| || | | |||||| | || |||||||| |||| ||||| Sbjct 693184 ---AAAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCATTAATGGAAAGCTGACAAACACA 693128 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | || ||| ||| ||||| | || | ||| | || | || Sbjct 693127 GGG------ACTGTCAAAATGCTT---CCTCCGCTCGAAAC---ACCTCTTTTTTCTGGC 693080 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCC 108263 | |||||| ||||||| | | ||| | ||| |||| || | || ||| | Sbjct 693079 AGTGCCTACTTTGTGGTCAGTAGAGAGTATGTGGGGTATGTACTACAGAATGAAAAACTC 693020 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 |||| | | || |||| ||||||| || ||||| || || | |||||||||||| Sbjct 693019 CAAAAGTTTATGGAGTGGGCGCAAGACACATACAGCCCTGATGAGTATCTCTGGGCCACC 692960 Query 108324 CTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCC-AAGTATCACATCT 108381 | ||| | ||| || | | || ||||| || || |||| || ||||| | | | Sbjct 692959 ATCCAGAGGATTCC-TGAAGTCCCGGGCTCACTTTCT-GCCAGCCATAAGTACGATTTGT 692902 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | |||||| || | |||||| | ||||||||||| ||| ||||| ||||| || Sbjct 692901 CTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAATACTTTGAGGGTGATGTTTCCA 692842 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||| || || || | |||||| ||| |||| | | | | ||||||| || | Sbjct 692841 AGGGTGCCCCCTACCCTCCCTGCGATGGGGTCCACGTGCGCTCGGTGTGCATTTTTGGAG 692782 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || ||| || ||||||| || | ||||| ||| | || || || ||||||||| Sbjct 692781 CTGGTGACTTGAACTGGATGCTGCGCAACCACCACTTGTTTGCCAATAAGTTTGAC 692726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347693615792688