Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 266 3e-66
seq30183 141 9e-29
seq37045 114 1e-20
>seq9420
Length=356144
Score = 266 bits (294), Expect = 3e-66
Identities = 503/730 (69%), Gaps = 20/730 (3%)
Strand=Plus/Plus
Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963
|| ||||| | ||||| || || ||||| || ||||||||||| || ||| ||||
Sbjct 52597 ACTCCCATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGT 52651
Query 13964 GATATATTTTCCATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACAACCTAG 14022
|| ||||| |||||||| |||||||| || | | | ||| ||| ||| |||| ||
Sbjct 52652 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCA-AACCCAG 52710
Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082
||| | | ||| || || | |||||||| ||||| ||||| | ||||||||
Sbjct 52711 TTCCAGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCAT 52768
Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142
|| || | || ||||| | | || | ||||| | |||||| ||||| |
Sbjct 52769 CCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATT 52828
Query 14143 GTTTATAATAATCGTAATAATTTC-ATTAGAAGGAGGATATTTTA---GATGTTTAAAAA 14198
| | || || || | || | || | | | | || | | || | ||||| || |
Sbjct 52829 GATAATTATT-TC-TCTTACTCTCTACTCCA--GTGGTTTGTGTACCAGGTGTTTGAACA 52884
Query 14199 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 14258
| | || ||||||||||| || | ||||||||||| ||||||||||| || |||||||
Sbjct 52885 TCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATG 52944
Query 14259 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 14318
| | || ||||||| ||||||||| || | ||| ||||| | || || | || ||||
Sbjct 52945 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAA 53004
Query 14319 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14378
||| | || || |||||||||| ||| | ||||| ||| | | |||| |||||
Sbjct 53005 AGA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGT 53061
Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438
| ||||| | ||||| || | || || || | | || ||| |||||| | |
Sbjct 53062 CCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGG 53121
Query 14439 CATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498
|||| | | | |||| | ||||| | | | ||||| || |||||||| || ||||
Sbjct 53122 CATTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTAT 53181
Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558
|||||||||| |||||||| || || || || || || ||| | ||||| | |||||||
Sbjct 53182 ACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTG 53241
Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618
| || || ||| | ||||| || |||| |||||||| ||||| |||||||| |
Sbjct 53242 TCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTG 53301
Query 14619 CTGCAAAAAA 14628
||||||| ||
Sbjct 53302 CTGCAAAGAA 53311
>seq30183
Length=85853
Score = 141 bits (156), Expect = 9e-29
Identities = 295/432 (68%), Gaps = 7/432 (2%)
Strand=Plus/Plus
Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263
|| |||| | ||| || | |||||||| || ||||||||||| || |||||||| |
Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502
Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323
|| ||||||| ||||||||| || | ||| ||||| || || || || |||||| |
Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562
Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383
| | || ||| ||||||||| | | ||||||| | | | |||||||
Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCA 31622
Query 14384 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442
||||| | | || |||| | | || || || | | | |||||||||||| |||||
Sbjct 31623 ATCCA-ATACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTTCAATGGCATT 31680
Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502
|| | | |||| | ||||| || | |||| ||| |||||||| | ||| ||
Sbjct 31681 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGATTATTTAT 31738
Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562
||||| ||| ||||||| |||| | || || ||||| || || | |||||
Sbjct 31739 GTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAAT 31798
Query 14563 TTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621
|| | || |||| |||| ||| |||| ||||||| ||||| ||||||| ||||
Sbjct 31799 CTGAATTTCTTGAG-CAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTG 31857
Query 14622 CAAAAAATGCCA 14633
|||| || ||||
Sbjct 31858 CAAAGAAAGCCA 31869
>seq37045
Length=3135053
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || || || ||||||||||| || || || ||||||||||| |
Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||| ||
Sbjct 1579342 CTACAACACGTTCACC 1579357
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 1577072 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1577130
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 1577131 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1577190
Query 13975 CATAAAATCAAATGGATT 13992
|||||| |||||||| ||
Sbjct 1577191 CATAAAGTCAAATGGGTT 1577208
Score = 86.0 bits (94), Expect = 6e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533
||||| || |||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 1581334 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 1581393
Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558
|| ||||| ||||| | |||||||
Sbjct 1581394 AAGCCATAGAAACAGCGGGCTTCTG 1581418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 481528554788160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |